Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D11
         (490 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   5.3  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.3  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.3  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.3  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.3  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.3  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.3  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 255 RFDVVRLPRRYLPVCGVRWLGS 320
           ++ V R PRR +    + WLG+
Sbjct: 148 KYGVKRTPRRMIVYVSLVWLGA 169


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 6/26 (23%), Positives = 14/26 (53%)
 Frame = +1

Query: 301 VFAGWAAISVSILVLMEGLSAFLHTL 378
           +  GW+A+ ++  +   G+    HT+
Sbjct: 131 LITGWSAVVITAAICTSGIVGRTHTV 156


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +1

Query: 280 GGIFLCVVFAGWAAISVSILVLM 348
           G  F C++F   +++ +++LVL+
Sbjct: 258 GSYFNCIMFMVASSVVLTVLVLI 280


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +1

Query: 280 GGIFLCVVFAGWAAISVSILVLM 348
           G  F C++F   +++ +++LVL+
Sbjct: 258 GSYFNCIMFMVASSVVLTVLVLI 280


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +1

Query: 280 GGIFLCVVFAGWAAISVSILVLM 348
           G  F C++F   +++ +++LVL+
Sbjct: 258 GSYFNCIMFMVASSVVLTVLVLI 280


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +1

Query: 280 GGIFLCVVFAGWAAISVSILVLM 348
           G  F C++F   +++ +++LVL+
Sbjct: 258 GSYFNCIMFMVASSVVLTVLVLI 280


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +1

Query: 280 GGIFLCVVFAGWAAISVSILVLM 348
           G  F C++F   +++ +++LVL+
Sbjct: 258 GSYFNCIMFMVASSVVLTVLVLI 280


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +1

Query: 280 GGIFLCVVFAGWAAISVSILVLM 348
           G  F C++F   +++ +++LVL+
Sbjct: 258 GSYFNCIMFMVASSVVLTVLVLI 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,557
Number of Sequences: 438
Number of extensions: 3717
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)