Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_D10
(529 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 32 0.046
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 30 0.19
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 0.99
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 1.7
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 3.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 3.0
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 26 3.0
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 4.0
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.0
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 25 5.3
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 25 7.0
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 25 7.0
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 7.0
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.2
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 25 9.2
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 25 9.2
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 9.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 9.2
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 32.3 bits (70), Expect = 0.046
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 139 PVMRPSHVPTRPLPAEKVSPAKPGHLPDSLCNG 41
PV P PT+P A +S +P +LP+ NG
Sbjct: 521 PVFTPRSFPTKPFSATDISSVQPTNLPNGSTNG 553
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 30.3 bits (65), Expect = 0.19
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 253 NHKTIYAKLAVSTPSHERKSDNYILINVPRPASRPFRRPVMRPSHVPTRPLPA 95
N ++ A T SH +S + N + F P+MR S T P+PA
Sbjct: 566 NPPSVMPTYARKTSSHSERSSHSSYHNSSHVPTAAFNSPIMRTSTKSTSPIPA 618
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 0.99
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = -1
Query: 214 PSHERKSDNYILINVPRPASRPFR-RPVMRPSHVPTRPLPAEKVSPAKPGHLPDSLCNGR 38
PS+E +S N +I+ P P++ F+ P + S+V T PL + V+ +K + D+ +
Sbjct: 870 PSYEEESFNATVIHAPTPSTATFQGHPTI--SNVATPPL-KQDVTESKASPVADASATHQ 926
Query: 37 S 35
S
Sbjct: 927 S 927
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -1
Query: 118 VPTRPLPAEKVSPAKPGHLPDSLCNGRSRPAPFPPS 11
VPT P P+ P P SL G P PPS
Sbjct: 417 VPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPS 452
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 220 STPSHERKSD-NYILINVPRPASRPFRRPVMRPSHVPTRPLPAEKVSPAKPGHL 62
++PSH ++ + +P P+S PF P+ H + P + + PG L
Sbjct: 79 TSPSHHANTEIDSSSSMLPPPSSDPFSSPLSSSLHRSSPKRPHDSLGEESPGKL 132
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1
Query: 169 PRPASRPFRRPVMRPSHVPTRPLPAEKVSPAKPGHLPDSLCNGRSRPAPFPP 14
P PAS P P+ PS P P+P+ PA+P S + S P+ PP
Sbjct: 152 PSPASAP---PI--PSKAP--PIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 259 TYNHKTIYAKLAVSTPSHERKSD-NYILINVPRPASRPFRRPV 134
T KTI + + P ++ S+ N +L+N P PAS P + +
Sbjct: 458 TSMQKTIDSSFPLKQPINKPSSNPNNLLLNDPSPASTPVAKTI 500
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 4.0
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 185 YSNKRPASRLATLPASCHASVPRTDSPSARGEGQSGQTRPPPRLP 51
+S K+ A L T A+ AS +T +PS+ G PPP P
Sbjct: 271 WSTKQDAVPLKTALANLSAS--KTQAPSSGDSANGGLPPPPPPPP 313
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/43 (23%), Positives = 20/43 (46%)
Frame = -1
Query: 217 TPSHERKSDNYILINVPRPASRPFRRPVMRPSHVPTRPLPAEK 89
T S + ++ + +P+P + + + P+ P P P EK
Sbjct: 271 TSSSQPSENDANITALPKPEPKMYENSDLTPARTPVTPAPLEK 313
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 298 IPIKQLLLKHFYLTYNHKTIYAKLAVST 215
IPI +LLLK + N + I+A L V T
Sbjct: 70 IPILELLLKQKQIDENQRGIFALLLVPT 97
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 123 PTYRLALCPRRRSVRPNQATS 61
P YRLAL R + +R +ATS
Sbjct: 361 PAYRLALQTREQHIRREKATS 381
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 7.0
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = -1
Query: 211 SHERKSDNYILINVPRPASRPFRRPVMRPSHVPTRPLPAEKVSPAKPGHLPDSLCNGRSR 32
S ER+ +L N+ S P RP VP E S + G L D++ RSR
Sbjct: 663 SVERRRREQVLTNIGDSESEDDNIP--RPGIVPFYNENNESSSDTRNGLLSDNVSESRSR 720
Query: 31 PAPFPPS 11
PS
Sbjct: 721 RPSRAPS 727
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -3
Query: 182 SNKRPASRLATLPASCHASVPRTDSPSARGEGQSGQTRPPPRLP 51
S +PA T AS +++ + +P A + PPP P
Sbjct: 1058 SASKPAPSTVTSAASSPSNISKPSAPVANNVSKPSAVPPPPPPP 1101
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 24.6 bits (51), Expect = 9.2
Identities = 21/82 (25%), Positives = 30/82 (36%)
Frame = -1
Query: 259 TYNHKTIYAKLAVSTPSHERKSDNYILINVPRPASRPFRRPVMRPSHVPTRPLPAEKVSP 80
T+ Y L + + + L+N P R P + VP PLP E P
Sbjct: 67 TFESTQTYENLESISKNEPTSEASKPLLNELVPEEPLPREPPLPNEPVPEEPLPGEPPLP 126
Query: 79 AKPGHLPDSLCNGRSRPAPFPP 14
+P +P+ G P P P
Sbjct: 127 DEP--VPEEPLPGEP-PLPNEP 145
>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 610
Score = 24.6 bits (51), Expect = 9.2
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 142 RPVMRPSHVPTRPLPAEKVSPAKPGHLPDSLCN-GRSRPA 26
+ + P P P +++SPAKP + S+ + +S PA
Sbjct: 108 KEIKNPISQPILPNKKDEISPAKPSAIDSSIKDVTKSHPA 147
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 24.6 bits (51), Expect = 9.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 80 RTDLLRGQRASRYVGRTHDRTPEGSRGGTRDVY*NIII*F 199
+T G R S+Y+G RTP+ G+ D ++ + F
Sbjct: 537 KTRCSNGLRVSKYLGNFLQRTPQDIEFGSLDADKSVTVLF 576
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 24.6 bits (51), Expect = 9.2
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 142 RPVMRPSHVPTR-PLPAEKVSPAKPG 68
RP+M P VP+ P AE V PA PG
Sbjct: 543 RPMMMPGSVPSAGPAEAEAV-PAVPG 567
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.6 bits (51), Expect = 9.2
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +3
Query: 426 LNTVRLQSKLKLLIKYMRI 482
+N LQSK+K+++K++ I
Sbjct: 1516 MNITDLQSKMKIIVKFLNI 1534
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,042,134
Number of Sequences: 5004
Number of extensions: 41410
Number of successful extensions: 127
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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