Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D07
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.9  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    25   5.9  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   7.9  

>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +1

Query: 40  AKNMYLFYRIQIFYLYKTMYLYVKLSR*YHSRS---YSDFKNTICSY 171
           ++NM+L   +Q FY+    Y+  K+ R Y S     Y+  K  I ++
Sbjct: 223 SENMFLMMTVQFFYVCGIPYILFKIIRMYTSTQKEYYASSKQMITTF 269


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 326 LIFMSIIFFTWNPNY 370
           L+ +S+ F +W+PNY
Sbjct: 40  LVLISLYFMSWHPNY 54


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 195 LCLCCIYSALRWFNTEP*FLLVSKIKYKYVSLIQ 296
           LCLCCI S   WF++ P F+ +S   + ++SL++
Sbjct: 39  LCLCCITS--YWFSSGP-FISLS---FWFLSLVR 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,763,425
Number of Sequences: 5004
Number of extensions: 33250
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)