Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D06
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    28   0.83 
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    27   1.9  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   3.3  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.7  
SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schiz...    25   7.7  

>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = -2

Query: 468 KAGHSIDVVISGKTPEDKMAGILLEARQGDKI-VGTWTVSPDDTFSQPLNCGEPNNAVTH 292
           ++G S DVV+     +D     L +A +  K  V   ++    +  +PL  GE  +   H
Sbjct: 430 ESGASSDVVVIDDEEDDIENRPLNQALKASKAAVSNASLLQSSSLDRPL-LGEMKDK-NH 487

Query: 291 KMHAKELDRQTVSYPWT 241
           K+    LD   +SYPW+
Sbjct: 488 KVLMPSLDDPMLSYPWS 504


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 177 FWVGIESAPVKVLSH*IMSVIITYLMST 94
           F +GI++A + VL+H I +VI+T   S+
Sbjct: 321 FVIGIQNAEIPVLNHIINAVILTSACSS 348


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 13/60 (21%), Positives = 33/60 (55%)
 Frame = -2

Query: 363 WTVSPDDTFSQPLNCGEPNNAVTHKMHAKELDRQTVSYPWTAPKDLEGDVVLKVTIVKSY 184
           W+ S ++  ++ ++  +  +A    +  ++L   TVS PW +P +   +  L++ IV+++
Sbjct: 698 WSYSEENFLNKKMSSEQAEDAAY--VRTQQLIPPTVSPPWNSPSNNYTESDLELGIVRTF 755


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 209 SRSPLSRATPSSGSESNQP 153
           SR P  RATPS+G +   P
Sbjct: 435 SRQPTVRATPSTGKQIEPP 453


>SPAPJ695.01c |||S. pombe specific UPF0321 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 41  IIYKYNCCIFLMFVIQINVDI 103
           ++  Y CC+FL F++  NVD+
Sbjct: 2   LLLLYICCLFLKFIL-ANVDL 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,866,358
Number of Sequences: 5004
Number of extensions: 38398
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)