Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D06
         (472 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK131302-1|BAD18470.1|  626|Homo sapiens protein ( Homo sapiens ...    47   3e-05
AK128824-1|BAC87625.1|  706|Homo sapiens protein ( Homo sapiens ...    30   3.5  

>AK131302-1|BAD18470.1|  626|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16275 fis, clone NT2RI2027157, moderately
           similar to Mouse SDR2 mRNA. ).
          Length = 626

 Score = 47.2 bits (107), Expect = 3e-05
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
 Frame = -2

Query: 468 KAGHSIDVVISGKTPEDKMAGILLEARQGDKI----VGTWTVSPDDTFSQPLNCGE-PNN 304
           + G  I+V +SG        G LLEAR  + +    +G++T+  D   SQ L C +   +
Sbjct: 59  RPGDQIEVTLSGHP----FKGFLLEARNAEDLNGPPIGSFTLI-DSEVSQLLTCEDIQGS 113

Query: 303 AVTHKMHAKELDRQTVSYPWTAPKDLEGDVVLKVTIVKSYAVFWVGI 163
           AV+H+  +K+ +   +   W AP          VT+V+ Y ++WV I
Sbjct: 114 AVSHRSASKKTE---IKVYWNAPSSAPNHTQFLVTVVEKYKIYWVKI 157


>AK128824-1|BAC87625.1|  706|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46160 fis, clone TESTI4002141. ).
          Length = 706

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 354 LRSKCRRSCHPDELPGGCRPFCLRVFC 434
           LR+     C P +  GGC   C+RV C
Sbjct: 241 LRASVSECCVPGDAQGGCAGICVRVLC 267


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,319,432
Number of Sequences: 237096
Number of extensions: 1483407
Number of successful extensions: 4270
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4270
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)