Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D06
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z81120-2|CAB03344.2|  426|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.     27   9.0  
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno...    27   9.0  

>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -2

Query: 285 HAKELDRQTVSYPWTAPKDLEGDVVLKVTIVKSYAVFWVGIESAPVKV 142
           HA    + +V   W AP+   G VV + +++++  +++   E   VK+
Sbjct: 125 HANLKSKTSVHMMWKAPEVSSGCVVFRASVIETKYIWFTEAEGLTVKL 172


>Z81120-2|CAB03344.2|  426|Caenorhabditis elegans Hypothetical
           protein T12D8.4 protein.
          Length = 426

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 393 ARQGDKIVGTWTVSPDDTFSQPLNCGEPNNAVT 295
           +R+   +VG   ++ D   ++P  C E N+AVT
Sbjct: 142 SRKAFTVVGIEDINSDPKLNEPATCVESNHAVT 174


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 23/91 (25%), Positives = 41/91 (45%)
 Frame = -3

Query: 422 KTKWPASSWKLVRVTRSSALGP*APMIPSRNPSTVVNQITP*PTRCMPKN*TDRLFLTPG 243
           ++K P +  +    ++S +  P     PS++P     + +P  +    K+ + R   +P 
Sbjct: 430 RSKSPPAPRRRRSPSQSKSPAPRRRRSPSKSPQAPRRRRSPSGS----KSRSPRRRRSPA 485

Query: 242 QLLRT*KATLCSRSPLSRATPSSGSESNQPP 150
              R  ++    RSP  R +PSS S S  PP
Sbjct: 486 AAPRRRQSPQRRRSPRRRRSPSSSSRSRSPP 516


>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
          Length = 1040

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 212 CSRSPLSRATPSSGSESNQ 156
           C  SP S  +PSSGS+ NQ
Sbjct: 34  CDVSPNSMTSPSSGSDQNQ 52


>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable
           abnormal morphology protein19 protein.
          Length = 1040

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 212 CSRSPLSRATPSSGSESNQ 156
           C  SP S  +PSSGS+ NQ
Sbjct: 34  CDVSPNSMTSPSSGSDQNQ 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,508,792
Number of Sequences: 27780
Number of extensions: 224835
Number of successful extensions: 557
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)