Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D03
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   1.7  
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    26   2.3  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   5.2  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   6.9  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    24   9.1  

>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 391 GQQHAKQYNIHTLWKPYHISNLRSPSLYESQ 299
           G+QH    ++HT + P   S + S SL  SQ
Sbjct: 169 GKQHLSSLSLHTHFNPSSSSTVSSDSLESSQ 199


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 379 AKQYNIHTLWKPYHISNLRSPSLYESQTNKRT 284
           AKQ N+ + W  + I+NL+S   Y   T + T
Sbjct: 294 AKQMNVESDWPAFVIANLKSMLKYPFPTTELT 325


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 12/57 (21%), Positives = 27/57 (47%)
 Frame = +2

Query: 221  ILNNHKHDKLYGFEVITILEVSPFVRLRLV*AWRS*VRNVVRFPESMYVVLFSVLLA 391
            I+   +HD++     I   +++  VR   +  W++ V N  R    +   L S++++
Sbjct: 1857 IIGQERHDRILSTLYIVRQDIAAVVRTPAIQIWKAIVVNTPRTVREILPTLTSIIVS 1913


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 107 LKQNNSVINSHELLVFVTVRYSHSDGII 190
           +KQ  +++++  L  FVT+ Y HS GII
Sbjct: 488 IKQITNIMHNFNL-EFVTLSYLHSKGII 514


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 150 TNNSCELITLLFCLR 106
           TNNS E+IT + CLR
Sbjct: 424 TNNSKEVITPILCLR 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,769,736
Number of Sequences: 5004
Number of extensions: 33428
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)