Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D03
         (445 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0681 - 24242485-24242560,24242721-24242785,24242874-242430...    29   2.2  
12_01_1048 + 10770461-10770612,10770721-10770730,10771457-107716...    27   9.0  

>01_05_0681 -
           24242485-24242560,24242721-24242785,24242874-24243029,
           24243073-24243121,24243291-24243366,24243456-24243666,
           24244038-24244160,24244245-24244363,24244439-24244532,
           24245123-24245233,24245336-24245392
          Length = 378

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 236 YDYSKYFISSKDIGIRLSRPSDYNVLLRTPT 144
           Y   +YF  +K   +    PSD + LLRTPT
Sbjct: 160 YSRPRYFCLAKREPVSFQNPSDNSKLLRTPT 190


>12_01_1048 +
           10770461-10770612,10770721-10770730,10771457-10771624,
           10771668-10772017,10772107-10772508,10772940-10773318,
           10773801-10774046
          Length = 568

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -2

Query: 387 SSTLNNTTYILSGNRTTFLT*DLQAYTSLKRTNGLTSSIVMTSKPY 250
           SS+L + T     NR T +    +  TSLKRTN   + I +T+  Y
Sbjct: 477 SSSLGHNTITEGNNRHTNVL-SPELVTSLKRTNERVAQISLTNSIY 521


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,504,062
Number of Sequences: 37544
Number of extensions: 178591
Number of successful extensions: 301
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)