Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D03
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97401-2|AAB52467.3|  193|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U97401-2|AAB52467.3|  193|Caenorhabditis elegans Hypothetical
           protein F21A9.1 protein.
          Length = 193

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 119 NSVINSHELLVFVTVRYSHSDGIIVFLCPY*K*SILNNHKHDKLYGFEVI 268
           N V N   L +   +R  + +G++ F   +     L N+K DK+Y   +I
Sbjct: 23  NVVFNKILLRLRPILRVRNPEGLVAFTTSFRNNEYLKNYKFDKVYNVSLI 72


>Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical
           protein K11H3.4 protein.
          Length = 717

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 271 NTRSQSVCSFETRISLEILS*KCGTVSREYVCC 369
           N  SQ V +  T++   ILS + G + + +VCC
Sbjct: 209 NFLSQVVENLMTKVDANILSRRVGKLFKNHVCC 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,690,869
Number of Sequences: 27780
Number of extensions: 181305
Number of successful extensions: 301
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)