Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D03
         (445 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   3.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.0  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.0  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.0  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.0  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 394 PGQQHAKQYNIHTLWKPYH 338
           P Q H  QY+ H    P+H
Sbjct: 318 PHQHHPSQYHPHRGSSPHH 336


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 437 CPPSDYTKITFSCQTR 390
           C P  Y  +TF+ Q R
Sbjct: 176 CCPEPYVDVTFTIQIR 191


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 437 CPPSDYTKITFSCQTR 390
           C P  Y  +TF+ Q R
Sbjct: 176 CCPEPYVDVTFTIQIR 191


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 437 CPPSDYTKITFSCQTR 390
           C P  Y  +TF+ Q R
Sbjct: 176 CCPEPYVDVTFTIQIR 191


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 437 CPPSDYTKITFSCQTR 390
           C P  Y  +TF+ Q R
Sbjct: 176 CCPEPYVDVTFTIQIR 191


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 437 CPPSDYTKITFSCQTR 390
           C P  Y  +TF+ Q R
Sbjct: 176 CCPEPYVDVTFTIQIR 191


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 437 CPPSDYTKITFSCQTR 390
           C P  Y  +TF+ Q R
Sbjct: 176 CCPEPYVDVTFTIQIR 191


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 437 CPPSDYTKITFSCQTR 390
           C P  Y  +TF+ Q R
Sbjct: 244 CCPEPYVDVTFTIQIR 259


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 437 CPPSDYTKITFSCQTR 390
           C P  Y  +TF+ Q R
Sbjct: 244 CCPEPYVDVTFTIQIR 259


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 6/28 (21%), Positives = 16/28 (57%)
 Frame = +3

Query: 138 MNCWCS*QYVIVTRTG*SYSYVLTRNKV 221
           M+CW +  Y+++      Y ++  R+++
Sbjct: 69  MSCWMNVYYIVILAWAIFYFFMSMRSEL 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,520
Number of Sequences: 438
Number of extensions: 2264
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)