Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D02
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)               178   2e-45
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)                84   7e-17
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)                58   5e-09
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         31   0.53 
SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0)                       31   0.70 
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_38780| Best HMM Match : Astacin (HMM E-Value=0)                     27   6.5  
SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)           27   6.5  
SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.5  

>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score =  178 bits (433), Expect = 2e-45
 Identities = 77/130 (59%), Positives = 98/130 (75%), Gaps = 2/130 (1%)
 Frame = +3

Query: 111 ESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHGAPDSDTRHIGDL 290
           E  P  ++G ++GL  G HGFH+H +GDNTNGC SAG HFNP K+EHG P  + RH+GDL
Sbjct: 24  EGKPCKITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDL 83

Query: 291 GNIEASSDGGVTKVCIQ--DSQISLVGPNSIVGRTLVVHADPDDLGLGGHELSKSTGNAG 464
           GN+ A  DG   K CI   D+ ++LVG +S+VGR++VVHAD DDLG GGHE SK+TG+AG
Sbjct: 84  GNVVAGDDG---KACIDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAG 140

Query: 465 ARIACGVIGL 494
            R+ACGVIG+
Sbjct: 141 GRLACGVIGI 150


>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
          Length = 100

 Score = 83.8 bits (198), Expect = 7e-17
 Identities = 40/71 (56%), Positives = 51/71 (71%)
 Frame = +3

Query: 276 HIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVHADPDDLGLGGHELSKSTG 455
           H+GDLGNI A+ +G  T    +D  + +     I+GR +VVHAD DDLG GGHELSKSTG
Sbjct: 1   HVGDLGNIIANQNGRAT-FRFEDKTVKVW---DIIGRAIVVHADEDDLGRGGHELSKSTG 56

Query: 456 NAGARIACGVI 488
           N+GAR+ CG+I
Sbjct: 57  NSGARVGCGII 67


>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 27/49 (55%), Positives = 35/49 (71%)
 Frame = +3

Query: 249 HGAPDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLV 395
           HGAP+   RH+GDLGNIEA ++ G+  V I D  +SL G  SI+GR+LV
Sbjct: 2   HGAPEDKDRHLGDLGNIEADAN-GIADVSITDCLVSLTGQCSIIGRSLV 49


>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 9/129 (6%)
 Frame = +3

Query: 39  GMPAKAVCVLHGDVSGTVFFDQKDESSP----VVVSGEVKGLSKGKHGFHVHEFGDNTNG 206
           G   KA   + G + GTV F Q   ++     + ++G  + LS   H   V   G+    
Sbjct: 54  GTTLKATFSMSG-IRGTVTFTQSSPNTSTNIKLALTGVNETLSWQIHDLPVIYKGNAATT 112

Query: 207 CTSA--GAHFNP---LKQEHGAPDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPN 371
           C +   G  ++P      +  A    +  +GDL       DG        DS + L G +
Sbjct: 113 CNTVALGNLYDPDGTATAQCSAAQKKSCAVGDLRGKFGFIDGNNMSSVFHDSNLPLTGRH 172

Query: 372 SIVGRTLVV 398
            I GRTLV+
Sbjct: 173 GIFGRTLVL 181


>SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0)
          Length = 438

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 24/84 (28%), Positives = 35/84 (41%)
 Frame = +1

Query: 97  STKRMKAHQ*LFLEKSKDLVRASTVSMYMSLVTIPTVAPLLELTSTH*SRSMVHLIRILV 276
           S   M  HQ  +      L+RA T++ Y   +T+P     LE T    +R +V  +    
Sbjct: 167 SMVEMNGHQSFYSSYITLLLRADTIARYQQSLTLPCNINGLENTPELAARLLVSAVEWAK 226

Query: 277 TLET*EILKLPVMVVLLRFAFRTL 348
            +     L LP   VLLR  +  L
Sbjct: 227 NIPFYSDLPLPDQAVLLRSCWSEL 250


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 198  TNGCTSAGAHFNPLKQEHGAPDSDTRHIGDLGNIEASSDG 317
            T+  +SA  HF+    +H  P S      D+  +E+ S+G
Sbjct: 3205 TSASSSAKVHFSNAASDHDEPQSPVNAFHDMKTLESFSEG 3244


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = +3

Query: 96   FDQKDESSPVVVSGEVKGLSKGK 164
            +D +D  + + ++GE+KG+++GK
Sbjct: 5974 YDSRDRFAKIYINGELKGVTRGK 5996


>SB_38780| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 1153

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 368 QQHCWTHFGSPCGS**SRTWRSRIEQVYRQCW 463
           Q +C+ H G+ C S   R    ++  + R CW
Sbjct: 805 QDYCYVHIGAGCTSYVGRQGNRQLVSLARGCW 836


>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
          Length = 906

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 279 CDEYPNQVHHAPALVG*SELQQRCNRWYCHQ 187
           C ++ ++V  +P +V    +   C++W+CHQ
Sbjct: 500 CHQWLSRVVLSPVVVTSGFVTSGCHQWFCHQ 530



 Score = 27.1 bits (57), Expect = 8.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 210 CNRWYCHQTHVHG 172
           C++W+CHQ   HG
Sbjct: 725 CHQWFCHQWFCHG 737


>SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = +3

Query: 183 EFGDNTNGCTSAGAHFNPLKQEHGAPDS----DTRHIGDLGNIEASSDGGVTKVCIQDSQ 350
           E+GD   G   + A F+ L+ E G P +    +  H  D  +I+   D GV K  + D  
Sbjct: 300 EWGDGIRGLALSAARFSLLRLEEGPPHTKNWREDDHTDDHHDID---DDGVNKEDVDDGD 356

Query: 351 I 353
           +
Sbjct: 357 V 357


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,244,662
Number of Sequences: 59808
Number of extensions: 341363
Number of successful extensions: 867
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)