Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_D01
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    30   0.14 
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    28   0.55 
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   1.7  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   2.9  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   3.9  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   5.1  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    25   5.1  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   6.7  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    24   8.9  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        24   8.9  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    24   8.9  

>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 30.3 bits (65), Expect = 0.14
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 25  VGGVDDSIVLNNNTGVTGGFSGCIKECMIYENAVD 129
           V  + DSI  +    VTG +SG + +C I+E  VD
Sbjct: 294 VCSIGDSIASSPYITVTGEWSGTLADCTIFEEGVD 328


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 180 IIAALLYISRLDRRIDNV--HCIFINHTLLDASTESACHAC 64
           ++  L+Y  ++++R D      I +N+  +DA TES C  C
Sbjct: 236 LVDVLIYDGKVEKRSDGASYRAIRVNNENIDAFTESPCGNC 276


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -1

Query: 238 RNLRCGI--GMSLQPQVYPLCHYCCTPVH*QTGSKN*QCP 125
           R L C I  GM   P V P  H  C P   Q  +++ QCP
Sbjct: 165 RELECQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQCP 204


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 130 IVNSSIQSANVQECSNNDRGDIP 198
           + NSS+ SA+VQE ++N  G  P
Sbjct: 341 LTNSSVASADVQERTHNTNGASP 363


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +1

Query: 37  DDSIVLNNNTGVTGGFSGCIKECMIYENAVDIVNSSIQSANVQECSNND 183
           +DS  LN+   +TG         ++ + +VDI +++++ AN Q+ +  D
Sbjct: 441 EDSKDLNDTNSITGSSPTEESNALVEDTSVDI-SATLEEANTQQENAED 488


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 15/67 (22%), Positives = 28/67 (41%)
 Frame = -3

Query: 206 SASGISPLSLLLHSCTLADWIEELTMSTAFS*IIHSLMHPLNPPVTPVLLFNTIESSTPP 27
           +A  +   S  L +  L +W +E+T ++    IIH +   L+     +  +     +   
Sbjct: 312 NAGFVMGTSATLFNTFLLEWSQEVTSNSTLYDIIHKVFEKLSEDQNDIAPYPNPYQNFTT 371

Query: 26  TNMGVSN 6
           TN  V N
Sbjct: 372 TNTTVKN 378


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -3

Query: 317 NGFGTRFSQYVPVNPSGQMHDMLSIAQEPPLRHWHVPSAS 198
           NG+    ++YV  N       M+ +AQ+    H H P  S
Sbjct: 37  NGYFQDSNEYVEPNIPAVYGSMIPVAQQLQQHHVHTPGES 76


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 22/100 (22%), Positives = 39/100 (39%)
 Frame = -3

Query: 305  TRFSQYVPVNPSGQMHDMLSIAQEPPLRHWHVPSASGISPLSLLLHSCTLADWIEELTMS 126
            T  +   P+  S  ++    I     L      ++S +   S  + S T+ +    +T S
Sbjct: 1852 TALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSS 1911

Query: 125  TAFS*IIHSLMHPLNPPVTPVLLFNTIESSTPPTNMGVSN 6
            TA +         +    TP+   + + SSTP T+  V N
Sbjct: 1912 TALNTSTPITSSSVLNSSTPITSSSVLNSSTPITSSTVVN 1951



 Score = 24.6 bits (51), Expect = 6.7
 Identities = 22/100 (22%), Positives = 39/100 (39%)
 Frame = -3

Query: 305  TRFSQYVPVNPSGQMHDMLSIAQEPPLRHWHVPSASGISPLSLLLHSCTLADWIEELTMS 126
            T  +   P+  S  ++    I     L      ++S +   S  + S T+ +    +T S
Sbjct: 2044 TALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSS 2103

Query: 125  TAFS*IIHSLMHPLNPPVTPVLLFNTIESSTPPTNMGVSN 6
            TA +         +    TP+   + + SSTP T+  V N
Sbjct: 2104 TALNTSTPITSSSVLNSSTPITSSSVLNSSTPITSSTVVN 2143



 Score = 24.2 bits (50), Expect = 8.9
 Identities = 20/100 (20%), Positives = 39/100 (39%)
 Frame = -3

Query: 305 TRFSQYVPVNPSGQMHDMLSIAQEPPLRHWHVPSASGISPLSLLLHSCTLADWIEELTMS 126
           T  +   P+  S  ++    I     L      ++S +   S  + S T+ +    +T S
Sbjct: 508 TALNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSS 567

Query: 125 TAFS*IIHSLMHPLNPPVTPVLLFNTIESSTPPTNMGVSN 6
           +  +         +    TP+  ++ + SSTP T+  V N
Sbjct: 568 SVLNSSTPITSSTVVNTSTPITRYSVLNSSTPITSSTVLN 607


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 115 ENAVDIVNSSIQSANVQECSNNDRGD 192
           E +VD+V S +QS +V     NDR +
Sbjct: 581 EMSVDLVESIVQSLSVAFKERNDRNE 606


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 329 REVINGFGTRFSQYVPVNPSGQMHDMLSIAQE 234
           RE+   F +RF++    +P   + D+LSI Q+
Sbjct: 701 RELEPSFRSRFTEIYVHSPDQNLDDLLSIIQK 732


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 332 IREVINGFGTRFSQYVPVNPSGQMHD 255
           ++ ++N F   + QY P +P+G  HD
Sbjct: 510 VKAIMNTF---YKQYKPFDPAGNKHD 532


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,914
Number of Sequences: 5004
Number of extensions: 41228
Number of successful extensions: 211
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)