Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_D01
(439 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681 34 0.057
11_01_0459 + 3546101-3548771,3548871-3549238 29 1.2
07_01_0890 - 7437901-7439339,7439452-7439657,7439841-7440171,744... 29 1.2
01_06_1753 - 39664219-39665445 29 1.2
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 29 1.6
04_01_0488 - 6419731-6420843 28 2.9
02_04_0413 + 22681957-22682035,22682253-22682788 28 2.9
01_01_1104 + 8747053-8747478 28 3.8
05_05_0236 - 23517512-23517682,23519436-23519516,23519685-235198... 27 5.0
05_03_0165 - 9083591-9084844 27 5.0
02_04_0274 - 21455942-21456325,21456453-21456521,21456622-214566... 27 5.0
02_01_0011 + 78277-78487,78594-79417 27 5.0
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412... 27 5.0
12_02_0821 + 23443733-23444425 27 6.6
08_02_1002 + 23439642-23440046,23440558-23440761,23440874-234409... 27 8.7
02_04_0554 - 23831212-23832163,23833173-23833438,23833694-238337... 27 8.7
02_04_0553 - 23808328-23809530 27 8.7
>11_06_0193 - 21132793-21132986,21133376-21133504,21133648-21133681
Length = 118
Score = 33.9 bits (74), Expect = 0.057
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1
Query: 313 PLITSRIGYSDPCSLRPCRNGGTCRADLNSRINHTCDCPLGF 438
P +T+ Y DPC L+ C +GG+C + +S H C C GF
Sbjct: 2 PSLTNLSIY-DPCLLQYCGDGGSC--ERSSEFGHRCACHDGF 40
>11_01_0459 + 3546101-3548771,3548871-3549238
Length = 1012
Score = 29.5 bits (63), Expect = 1.2
Identities = 25/79 (31%), Positives = 37/79 (46%)
Frame = +1
Query: 121 AVDIVNSSIQSANVQECSNNDRGDIPEAEGTCQCRNGGSCAIDSISCICPLGFTGTYCEN 300
+ DI N+ Q +++ SN GDIP A G C+ I+S S P+ G
Sbjct: 503 STDIGNAK-QLISLELSSNKLSGDIPNALGNCESLEYIMLGINSFSGSIPISL-GNISNL 560
Query: 301 RVPNPLITSRIGYSDPCSL 357
+V N L + + +S P SL
Sbjct: 561 KVLN-LSHNNLTWSIPASL 578
>07_01_0890 - 7437901-7439339,7439452-7439657,7439841-7440171,
7440268-7440405,7440619-7440874,7440963-7441318,
7441421-7441709
Length = 1004
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +1
Query: 196 PEAEGTCQCRNGGSCAIDSISCICPLGFTGTYCENRVPNPLITSRIGYSDPCSLRPCRNG 375
P AEG+C +GG + + C T C+ + + + S P + + CRNG
Sbjct: 940 PPAEGSC---SGGEGGTNGVGRCCTSVKRPTCCD------MGAAEVSDSSPETAKDCRNG 990
Query: 376 GTCRADLNS 402
C +NS
Sbjct: 991 RCCAKTMNS 999
>01_06_1753 - 39664219-39665445
Length = 408
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 100 ECMIYENAVDIVNSSIQSANVQECSNNDRGDIPEAEGTCQCRNGGSCA 243
E ++ENAV ++SS + V E GD+ CRNGG+ A
Sbjct: 46 EMSVHENAVQKMSSSFREEKVYEQQGGAGGDVQ------VCRNGGAAA 87
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 82 FSGCIKECMIYENAVDIVNSSIQSANVQECSNNDRGDIPEA 204
F GCI+ C +++ +D+ S N +ND PE+
Sbjct: 763 FFGCIEGCRVHDMVLDLARSLTSEQNFVTVLDNDEQRKPES 803
>04_01_0488 - 6419731-6420843
Length = 370
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 149 WIEELTMSTAFS*IIHSLMHPLNPPVTPVLLFNTIESS 36
W+EE+ TA ++H +H N +L+FNT S
Sbjct: 192 WMEEVATCTAVV-LLHGSLHWYNYKTDKILIFNTASES 228
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 28.3 bits (60), Expect = 2.9
Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Frame = +1
Query: 208 GTCQCRNGGSCAIDSISC---ICPLGFTGTYCENRVPNPLITSRIGYSDPCSLRPCRNGG 378
G QC SC C C G +G C P+P + PC PC G
Sbjct: 125 GGGQCPPSPSCENHHPPCKPGCCCCGCSGGECPPP-PSPPCQHECPPTPPCEHPPCSESG 183
Query: 379 TCRADLNSRIN 411
C NS N
Sbjct: 184 CCDKGCNSCCN 194
>01_01_1104 + 8747053-8747478
Length = 141
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 298 NRVPNPLITSRIGYSDPCSLRPCRNGGTCRADLNSR 405
N+VP P +T +GY + + PC + C + +++
Sbjct: 9 NKVPIPTVTLELGYGEDKAHTPCIDTTDCSKETHAK 44
>05_05_0236 -
23517512-23517682,23519436-23519516,23519685-23519891,
23519987-23520164,23520250-23520284,23520725-23520826,
23520908-23520964,23521236-23521325
Length = 306
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 28 GGVDDSIVLNNNTGVTGGFSG 90
GG DS+ + N TG++GG+ G
Sbjct: 179 GGEFDSVYIGNRTGLSGGWRG 199
>05_03_0165 - 9083591-9084844
Length = 417
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 206 SASGISPLSLLLHSCTLADWIEELTMSTAFS*IIHSL 96
S SP + L C L W+EE + +A S + H+L
Sbjct: 380 STGPFSPFTGFLTPCILPPWLEEFQIPSAGSLLSHAL 416
>02_04_0274 -
21455942-21456325,21456453-21456521,21456622-21456687,
21456796-21456861,21456982-21457149,21457262-21457351,
21457578-21457622,21458112-21458747
Length = 507
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 214 CQCRNGGSCAIDSISCICPLGFTGTYCENRVPNPLITSRIGY-SDPCSL 357
C +NGG+ ++S + P G N P P + +R G +DP S+
Sbjct: 262 CGGKNGGAAPFVNLSEVLPKGNGSGSAGNGAPKPRVRARRGQATDPHSI 310
>02_01_0011 + 78277-78487,78594-79417
Length = 344
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 280 TGTYCENRVPNPLITSRIGYSD 345
TG +C R+P I SR+G +
Sbjct: 57 TGRFCNGRIPTDFIASRLGLKE 78
>01_01_0562 +
4126368-4128196,4128517-4128715,4128827-4128886,
4129129-4129233,4129987-4130127,4130223-4130285,
4130925-4131152,4131250-4131333,4132000-4132157,
4132252-4132777,4133641-4133700,4133904-4134026,
4134906-4135181,4135282-4135347,4135500-4135631,
4135977-4136798,4137026-4137306,4137564-4137796,
4138022-4138260,4138367-4138558,4138808-4139080,
4139186-4139332
Length = 2078
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 224 RHWHVPSASGISPLSLLLHSCTLADWIEELT 132
R H+ +SPL + LH+C++ EE +
Sbjct: 153 REVHLGRVRSVSPLGITLHTCSIGPHAEEFS 183
>12_02_0821 + 23443733-23444425
Length = 230
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 334 GYSDPCSLRP-CRNGGTCRADLNSRINHTCDCPLG 435
G++ P + P GG C A L ++ CDCPLG
Sbjct: 124 GFNVPVVVSPQAVGGGQCPA-LGCVVDLNCDCPLG 157
>08_02_1002 +
23439642-23440046,23440558-23440761,23440874-23440990,
23441116-23441511,23441586-23441938,23442067-23442187,
23442602-23442781,23442813-23442896,23444398-23444523,
23445286-23445588
Length = 762
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 175 NNDRGDIPEAEGTCQCRNGGSCAID 249
+ DR P G+C+ +G +CA D
Sbjct: 425 DEDRSSSPSVSGSCESSDGAACAGD 449
>02_04_0554 -
23831212-23832163,23833173-23833438,23833694-23833748,
23834384-23834436,23834512-23834588,23834730-23834862,
23834958-23835098,23835840-23835960,23836137-23836242,
23836523-23836592,23836716-23836885,23837253-23837277,
23837662-23837777,23838926-23839217
Length = 858
Score = 26.6 bits (56), Expect = 8.7
Identities = 8/18 (44%), Positives = 16/18 (88%)
Frame = -2
Query: 198 RYIPSVIIAALLYISRLD 145
RY+PS++ A+ ++++RLD
Sbjct: 792 RYLPSIVAASSIFLARLD 809
>02_04_0553 - 23808328-23809530
Length = 400
Score = 26.6 bits (56), Expect = 8.7
Identities = 8/18 (44%), Positives = 16/18 (88%)
Frame = -2
Query: 198 RYIPSVIIAALLYISRLD 145
RY+PS++ A+ ++++RLD
Sbjct: 334 RYLPSIVAASSIFLARLD 351
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,262,079
Number of Sequences: 37544
Number of extensions: 293305
Number of successful extensions: 811
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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