Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C24
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    29   0.36 
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    27   1.9  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   2.5  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   3.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   4.5  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    25   7.8  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    25   7.8  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 61  LAMAAANRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPGGNYEPV 207
           +A   A+R+++  N  V  DG +  VVI  P   F+ P+N    N+ P+
Sbjct: 391 VAALLASRLNL--NHSVTGDGEAKQVVITMPSTHFT-PANNSSANHSPL 436


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 135 RCYCEPGSFLLSTIKRSWRKL*TRKHWTGVRR 230
           +C  EP S   STI+        R HW G+R+
Sbjct: 444 KCLTEPTSRFQSTIEIQKHPFFKRLHWNGLRK 475


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +1

Query: 190 GNYEPV--STGPAFVDFNHPNYPPKRYDNPLAR 282
           G+Y P   ST P    + +P+YPP  Y    AR
Sbjct: 117 GSYPPTQPSTQPLPQSYGYPSYPPAGYRGGSAR 149


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 114 WNTTIVHHVNSVCGSHGQYGEDRKTRKLSLSNSVR 10
           WNT   HH N  C +     E R  R+  + ++VR
Sbjct: 480 WNTVPGHHKNPKCRAKKLVVESRNGRREYVQDAVR 514


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 166 SQPSNGPGGNYEPVSTGPAFVDFNHPNYPP 255
           S P N P     PVS  PA    + P  PP
Sbjct: 265 SSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 124 CRPMEHHYCPPRELCLRQP 68
           C P   H+C    LCL+ P
Sbjct: 25  CSPQTSHWCKYPALCLKSP 43


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 310 YLYETFTSHHGREGCRIAWVDNWD 239
           Y+Y++      +   R  WV+NWD
Sbjct: 55  YIYKSNPGMEIKNAIRNGWVENWD 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,870,574
Number of Sequences: 5004
Number of extensions: 37003
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)