Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C23
         (581 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   1.4  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   3.3  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   4.4  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   5.8  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
 Frame = +2

Query: 305 CINGVCTEGNQCVCNPGYSMDLTDRRCKPRCAGGCPNGLCSGPNL----CICNMGY 460
           C+N +   G++C C PG++               C NG      +    CIC  G+
Sbjct: 44  CVN-LPGVGHRCQCQPGFTGKYCHENINDCKVNPCENGGTCVDKINAFQCICKEGW 98


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +3

Query: 354 DILWILPIEGASPV-VQVDVP 413
           DI  +LP +GASP+ + V +P
Sbjct: 183 DIALVLPTQGASPLPLLVPIP 203


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = +3

Query: 363 WILPIEGASPVVQVDVPMDSVQDLIFAFV 449
           W +   G     Q D+P+D    ++++F+
Sbjct: 31  WAIYRPGIGRYAQEDLPVDLCTHIVYSFI 59


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 365 P*NIRDCRHIDCLP 324
           P N +DC   DC+P
Sbjct: 77  PYNTQDCYREDCIP 90


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,734
Number of Sequences: 336
Number of extensions: 3320
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)