Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_C22
(577 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0215 + 6505231-6505554,6506786-6507682 33 0.16
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524... 32 0.38
02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042 31 0.87
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003... 30 1.1
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008... 29 2.7
07_03_0615 + 19983003-19983238,19983297-19983558,19983651-199839... 28 4.6
02_01_0376 + 2723370-2723783,2723818-2724122,2724484-2724688 28 4.6
01_06_0486 - 29729333-29729356,29729856-29730106,29730364-297304... 28 4.6
11_06_0265 - 21788531-21789798,21789914-21789947 28 6.1
09_04_0489 - 18031187-18031579,18032033-18034030,18034102-180342... 28 6.1
07_03_0710 - 20873420-20874745 28 6.1
12_01_0836 - 7801155-7801454,7801850-7801914,7802237-7802562,780... 27 8.1
03_06_0674 - 35449373-35449465,35449959-35450112,35450763-354508... 27 8.1
>03_02_0215 + 6505231-6505554,6506786-6507682
Length = 406
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = -3
Query: 218 GSRRSWISRHLKRKRHLPYPLANTSTGCYHLNTVSSVSIHQRRWDY----FLVYRRRVCK 51
GS W S +R H + +N ++ LNT +H RW++ F++ ++ + K
Sbjct: 75 GSFVIWDSHAFERDLHRHFKHSNFTSFIRQLNTYGFRKVHPDRWEWANEGFIMGQKHLLK 134
Query: 50 TLRRNRPS 27
T++R + S
Sbjct: 135 TIKRRKKS 142
>04_04_1355 +
32851514-32851696,32852132-32852224,32852334-32852485,
32852702-32852837,32852947-32853102,32853233-32853312,
32853475-32853568
Length = 297
Score = 31.9 bits (69), Expect = 0.38
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +2
Query: 197 LSNFDESQYELL-CLNRDAGGRDSFSNYATCNIAMSPSRTWLSAKDFLSDVSIAHTPLSL 373
+ NF++++ LL LN+DA ++ +N C++ + SA +L+ + +AH L
Sbjct: 224 MGNFEDAEGLLLESLNKDAKDAETLANLVVCSLNLGK-----SASRYLNQLKLAHPDHML 278
Query: 374 AQLLDTRSDLFN 409
+ + + D F+
Sbjct: 279 VKRMSSAEDSFD 290
>02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042
Length = 819
Score = 30.7 bits (66), Expect = 0.87
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Frame = -3
Query: 353 RLRRRKGN--PWRTTKF*ME--TWLCYMWHSWRTSPVLRRRGSGRAVRTG---SRRSWIS 195
RL+ G+ PW +F E + Y +++W+ +RR + ++ +TG SR+ S
Sbjct: 40 RLQAATGDYTPWLGQEFASEHEAYEFYRYYAWKLGFSVRREYANKSRKTGEITSRKFVCS 99
Query: 194 RH-----LKRKRHLPYPLANTSTGCYHLNTV 117
R KR H P +T TGC H N V
Sbjct: 100 REGFKAPDKRTNHTRTPQPDTRTGC-HANLV 129
>04_04_1127 -
31098233-31098326,31099968-31100047,31100198-31100353,
31100481-31100616,31101195-31101346,31102307-31102390,
31102495-31102656
Length = 287
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +2
Query: 197 LSNFDESQYELL-CLNRDAGGRDSFSNYATCNIAM-SPSRTWLS 322
+ +FDE++ LL LN+DA ++ +N CN+ + PS +LS
Sbjct: 214 MGSFDEAETLLLEALNKDAKDPETLANLIVCNLHLGKPSSRYLS 257
>07_03_1486 +
26899479-26899549,26899861-26899989,26900649-26900834,
26901025-26901247,26901662-26901666,26901796-26901924,
26902697-26902894,26903138-26903356,26903461-26903699,
26903797-26903888,26904009-26904224,26904327-26904554,
26904631-26904722,26904806-26904899,26905475-26905567,
26905667-26906640,26906727-26906841,26907135-26908895
Length = 1687
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 168 EMSLSFQVPTYPTSTRASTNCSA*TATPEDGTRSPTMP 281
E LSF P PTS R +T+ + + +P+ G + ++P
Sbjct: 834 EFGLSFPGPVSPTSGRQTTSLYSGSFSPKAGNKQSSLP 871
>07_03_0615 +
19983003-19983238,19983297-19983558,19983651-19983906,
19983982-19984044,19984131-19984570
Length = 418
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/75 (22%), Positives = 30/75 (40%)
Frame = +3
Query: 48 GLAYPASINQKIIPTALMYRN*RNSVQVITARGSVCKRIGEMSLSFQVPTYPTSTRASTN 227
G P + + + M + R+ ++V+T R + + Q P PT R + +
Sbjct: 185 GAGIPVPVEEHLTTYTRMVESMRSILRVLTCRAD---DVARADAAVQRPPVPTGPRPAAH 241
Query: 228 CSA*TATPEDGTRSP 272
T P G R+P
Sbjct: 242 VPRPTPPPHGGFRAP 256
>02_01_0376 + 2723370-2723783,2723818-2724122,2724484-2724688
Length = 307
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 374 AQLLDTRSDLFNIYGEFLKNNNVFFSNDATGLATTEKLDF 493
A LL R D F G+ L ++ FFS+ +T +LDF
Sbjct: 44 ADLLPLRLDAFFFKGQILTSHPYFFSSRSTARRIGGRLDF 83
>01_06_0486 -
29729333-29729356,29729856-29730106,29730364-29730466,
29730571-29730663,29730773-29730905,29731184-29731272,
29731385-29731553,29731930-29732016,29732388-29732506,
29732554-29732706
Length = 406
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -3
Query: 299 TWLCYMWHSWRTSPVLRRRGSGRAVRTGSRRSWISRHLKRKRHLPYP 159
TWL + H+ V R + G RSW+ + + R LP P
Sbjct: 102 TWLIWKEHNESLRGVQSLRNTAPVAEKGKLRSWVGPNGQYYRELPCP 148
>11_06_0265 - 21788531-21789798,21789914-21789947
Length = 433
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +2
Query: 119 QCSSDNSPWKCLQEDR--GDVAFVSSADLSNFDESQYE 226
+ S +++PWK +++ G+ F+SS+ +F SQYE
Sbjct: 333 ELSFNSNPWKWIEKKSLDGESIFISSSCNKSFAASQYE 370
>09_04_0489 -
18031187-18031579,18032033-18034030,18034102-18034234,
18035360-18036108
Length = 1090
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -1
Query: 478 GCSKTCCIVTEKNVVVLQEFAVNIEQVAPSVQQLGQAQRSVGD*DVGKEILGGQPS 311
G +K IVT++ + ++ NI+ + + GQ + D + E LGG+PS
Sbjct: 380 GANKNVTIVTQECHITSEDKLGNIDHSLATTKSQGQTPEKMPDETISGE-LGGRPS 434
>07_03_0710 - 20873420-20874745
Length = 441
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 320 SAKDFLSDVSIAHTPLSLAQLLDTRSDL 403
S +L D++I PL L +LDT SDL
Sbjct: 88 STATYLVDIAIGTPPLPLTAVLDTGSDL 115
>12_01_0836 -
7801155-7801454,7801850-7801914,7802237-7802562,
7805936-7806372
Length = 375
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 334 EILGGQPSSRWRHGYVTCGIVGERVPSSGVAVQAEQFVLAL 212
E+LGG S + G+V E + ++G AV AE+ L
Sbjct: 29 ELLGGSVVSMTLKAAIELGLVDELLAAAGAAVTAEELAARL 69
>03_06_0674 -
35449373-35449465,35449959-35450112,35450763-35450860,
35450947-35451234,35451313-35451503,35451789-35452006,
35452314-35452653,35452726-35453167
Length = 607
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = -3
Query: 164 YPLANTSTGCYHLNTVSSVSIH---QRRWDYFLVYRRRV 57
Y T T CY + +S IH Q RWDY+ Y V
Sbjct: 228 YLTNGTGTDCYSCSFANSTPIHETYQPRWDYWGRYMEPV 266
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,104,902
Number of Sequences: 37544
Number of extensions: 389102
Number of successful extensions: 1331
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -