Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C21
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   0.70 
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    27   0.92 
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb...    26   2.8  
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   3.7  
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M...    25   3.7  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   4.9  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    25   6.5  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   6.5  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    24   8.6  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    24   8.6  

>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 315 CICCPCFSCIPYFMDSCQNADHYCPNCNS 401
           C    C +  PY +++C N   Y  NCNS
Sbjct: 193 CNMTLCNTDYPYLVNTCFNGTQYPVNCNS 221


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 27.5 bits (58), Expect = 0.92
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 301 WHLYSAYAVRVFPAFRILWIRVKMPTTIAQTA 396
           W +  A  +R+ P FRI W+  +   T+ Q A
Sbjct: 64  WIIIDAIYLRLLPKFRIPWLSFQPAATLLQIA 95


>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 293 SFNGIYTLHMLSVFFLHSVFYGFVSKCRPLLPKLQLLYWNVS 418
           S   ++TL      ++ +VF  +VS CR     +QL  W+ +
Sbjct: 23  SLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTA 64


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -2

Query: 158 FIKQNQLKTPFSNFNSLIYNFTQ-TQLKFD 72
           ++ Q++ K P+S FNS++  + Q T+L+ +
Sbjct: 199 YVSQHKKKMPWSKFNSVLSRYIQCTKLQLE 228


>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +3

Query: 318 ICCPCFSCIPYFMDSCQN-ADHYCPNCNSY 404
           IC  C        D   + +D YCPNC+++
Sbjct: 44  ICKKCRKAFRIQFDQTMDESDEYCPNCDNH 73


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = +3

Query: 150 FYKSKMNNTDMSNRNVILQVGPKPSQMVCPSCNTTIITRIENKTTTKTHL 299
           F K   +  +   R++    G KP +   PSC      R E     +THL
Sbjct: 8   FCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDELIRHVRTHL 57


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 347 VFYGFVSKCRPLLPKLQLLYW 409
           +F  F+  CRPL+  L + +W
Sbjct: 218 IFSNFIKVCRPLIYMLFMWHW 238


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +3

Query: 207  VGPKPSQMVCPSCNTTIITRIENKTTTKTHLMAFILCIC 323
            +   P  + CPSCN T  +    K+  +T     + C C
Sbjct: 1247 INVSPLLLKCPSCNATSFSLRSVKSLKETLYANTVECDC 1285


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 222 SQMVCPSCNTTIIT 263
           S +VCP CNT  IT
Sbjct: 469 STLVCPVCNTVSIT 482


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 384 CPNCNSYIGMYQ 419
           CP CNS IG Y+
Sbjct: 289 CPKCNSKIGSYK 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,683,896
Number of Sequences: 5004
Number of extensions: 30699
Number of successful extensions: 106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)