Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C21
         (426 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816...    28   3.6  
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650...    28   3.6  
01_01_0216 + 1843413-1843509,1844583-1844694,1844841-1844908,184...    27   4.8  
09_04_0192 + 15478270-15480257,15480358-15480640,15480727-15481116     27   6.3  
02_03_0408 - 18692176-18692278,18692590-18692669,18692764-186928...    27   6.3  
11_06_0123 + 20334350-20334553,20335059-20335490,20336052-203361...    27   8.3  
03_05_0981 - 29391027-29391099,29391227-29391350,29391443-293915...    27   8.3  

>06_03_1303 +
           29180837-29181205,29181289-29181306,29181337-29181622,
           29185008-29186284,29186499-29187005
          Length = 818

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +3

Query: 213 PKPSQMVCPSCNTTIITRIENKTTTKTHLMAFILCIC 323
           P PS    PS + T  T+    TTT T  M  IL  C
Sbjct: 533 PSPSPSPSPSASATTPTQTGTSTTTTTSSMYSILTDC 569


>01_01_0832 -
           6500139-6500333,6500610-6500875,6501494-6501815,
           6501915-6502156,6502229-6502457,6503020-6503184,
           6503279-6503605,6504150-6504191,6504333-6504400,
           6504748-6504934,6506249-6506311,6506748-6506790,
           6506919-6507019,6507110-6507184,6507359-6507445,
           6507593-6507682,6507906-6507992,6508585-6508783,
           6509113-6509177,6509502-6509606,6509726-6509871,
           6510100-6510224,6510335-6510437,6510482-6510596,
           6510734-6510869,6511298-6511387,6511484-6511578,
           6511698-6511763,6511868-6511936,6512034-6512147,
           6512241-6512448,6512545-6512600,6512818-6513552
          Length = 1671

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 354 MDSCQNADHYCPNCNS 401
           M+  +NAD++CP+C S
Sbjct: 415 MEDLENADYFCPDCKS 430


>01_01_0216 +
           1843413-1843509,1844583-1844694,1844841-1844908,
           1845165-1845297,1845404-1845503,1845562-1845722,
           1846095-1846188,1846273-1846426,1846597-1846743,
           1846819-1846892,1846985-1847073,1847161-1847275,
           1847569-1847751
          Length = 508

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 290 NSFNGIYTLHMLSVFFLHSVFYGFVSKC 373
           N F G+Y L +++ F + +V+ GF S C
Sbjct: 451 NFFIGLYFLSVVNKFGISTVYLGFASVC 478


>09_04_0192 + 15478270-15480257,15480358-15480640,15480727-15481116
          Length = 886

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 330 CFSCIPYFMDSCQNADHYCPNCNSYI 407
           CFSC+P F+    + + Y   C  Y+
Sbjct: 119 CFSCLPVFLPPRAHDEFYAGFCKHYL 144


>02_03_0408 -
           18692176-18692278,18692590-18692669,18692764-18692890,
           18694016-18694051,18695832-18696085
          Length = 199

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 297 LMAFILCICCPCFSCIPYFMDSCQNADHYCPNCNSYIGMYQ 419
           +M F++ +C  C S     MD   +  HYCP+C   +  ++
Sbjct: 109 MMPFMMGVCFLCPS-----MDCLWHKYHYCPSCGEKVAEFK 144


>11_06_0123 +
           20334350-20334553,20335059-20335490,20336052-20336191,
           20336281-20336401,20337110-20337250,20337421-20337663
          Length = 426

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = +3

Query: 135 FKLVLFYKSKMNN--TDMSNRNVILQVGPKPSQMVCPSCNTTIITRIENKTTTKTHLMAF 308
           +K  + Y+++ N     M   N + +  P+P ++   S + TII +I      +T+ +  
Sbjct: 298 YKFAVLYEARSNTGIDRMKIINAVAKSVPQPHKVDLSSPDRTIIVQIAKVNAVRTNFVKL 357

Query: 309 I-LCICCPCFSCIPYFMDS 362
           +   +C    SC   F  S
Sbjct: 358 LNQLLCHTSCSCSESFFGS 376


>03_05_0981 -
           29391027-29391099,29391227-29391350,29391443-29391576,
           29391814-29391895,29391955-29392012,29392344-29392418,
           29392518-29392596,29393034-29393110,29393210-29393329
          Length = 273

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/69 (21%), Positives = 28/69 (40%)
 Frame = +3

Query: 177 DMSNRNVILQVGPKPSQMVCPSCNTTIITRIENKTTTKTHLMAFILCICCPCFSCIPYFM 356
           D   RN +L++    +    P C    +  +     +K   +  ++C        I Y+M
Sbjct: 67  DDQGRNHLLEITLPMNYPSSPPCLVADVPYLPELQWSKGSRLKDVVCQFQEVMIAIFYYM 126

Query: 357 DSCQNADHY 383
             C++ DHY
Sbjct: 127 LMCESPDHY 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,729,962
Number of Sequences: 37544
Number of extensions: 163892
Number of successful extensions: 459
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)