Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C20
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    26   1.5  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    25   2.0  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    24   4.7  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    23   8.3  

>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = -2

Query: 228 IEVIPQHTETLSQCVSFHITYYHLKLNVTRPIRSALHNDSNSRTSYLFIHNIIEISLLVL 49
           +E + +  E + QC  F+I+   ++ NV        +   N+  S+  +   I++  LVL
Sbjct: 326 LEQVTEILEKVEQCKQFYISSREMEENVPLSASKEFNYKLNALISWSNVMESIQVETLVL 385


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 92 IYSYITLLRYLY*FYS 45
          IY YI++L YLY F+S
Sbjct: 39 IYKYISILIYLYSFFS 54


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = -1

Query: 214 TTHRNIITMRFVSHHLLSLKTKRNKTDPL 128
           +++RN +T+  ++ HL ++ +K ++ D L
Sbjct: 202 SSNRNFVTIHELNEHLKNVNSKHSEIDDL 230


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -2

Query: 246 YNNTNIIEVIPQHTETLSQCVSFHI 172
           Y NTN+++ I  H   + Q +++ +
Sbjct: 397 YQNTNLLKAIDLHRGKIQQLLTYQV 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 886,658
Number of Sequences: 5004
Number of extensions: 13852
Number of successful extensions: 36
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)