Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C20
         (316 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0581 - 4312971-4313126,4314047-4314319,4314402-4314713           27   2.3  
02_01_0411 - 2998806-3000938                                           27   4.1  
11_06_0176 + 20929629-20929791,20929918-20930333,20930449-209307...    26   7.1  
06_01_0974 + 7541771-7542553,7542666-7542795,7543098-7543645,754...    25   9.4  

>01_01_0581 - 4312971-4313126,4314047-4314319,4314402-4314713
          Length = 246

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 129 SALHNDSNSRTSYLFIHNIIEISLLVLLYTLPININYFSLSCN 1
           S L   + + TSYL IH  I  +LLV +  L + +  F+L C+
Sbjct: 24  STLGASTAAVTSYLRIHEGIHYALLVTVSLLSVLLFAFNLLCD 66


>02_01_0411 - 2998806-3000938
          Length = 710

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 20/77 (25%), Positives = 34/77 (44%)
 Frame = -2

Query: 240 NTNIIEVIPQHTETLSQCVSFHITYYHLKLNVTRPIRSALHNDSNSRTSYLFIHNIIEIS 61
           N N   VIP     L + VS ++++ +L   +   I S L N      SY  +   I  +
Sbjct: 556 NNNFTGVIPMEIGELKELVSLNLSFNNLNGEIPESI-SNLKNLMVLDLSYNHLTGAIPPA 614

Query: 60  LLVLLYTLPININYFSL 10
           ++ L +    N++Y  L
Sbjct: 615 MVNLHFLSEFNVSYNDL 631


>11_06_0176 +
           20929629-20929791,20929918-20930333,20930449-20930736,
           20931034-20931147,20931245-20931352,20931701-20931744,
           20933106-20933200,20934103-20934182,20934278-20934391,
           20934476-20934628,20934740-20934832
          Length = 555

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 228 IEVIPQHTETLSQCVSFHI--TYYHLKLNVTRPIRSALHNDS 109
           IE    H E+LS    + +  + ++  L++ RP+  A+HN S
Sbjct: 59  IETTTAHGESLSASKEYSLAESQFNRALSIARPLDPAIHNIS 100


>06_01_0974 +
           7541771-7542553,7542666-7542795,7543098-7543645,
           7544482-7544864,7546670-7546766
          Length = 646

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -2

Query: 138 PIRSALHNDSNSRTSYLFIHN 76
           P R ALHN SN RTS   I N
Sbjct: 337 PPREALHNVSNRRTSSSSIGN 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,882,536
Number of Sequences: 37544
Number of extensions: 67751
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)