Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C20
         (316 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73978-2|CAA98292.2|  728|Caenorhabditis elegans Hypothetical pr...    29   0.53 
U88314-1|AAF99885.1|  342|Caenorhabditis elegans Hypothetical pr...    27   2.8  
AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine r...    26   5.0  
AF039053-6|AAC25874.2|  287|Caenorhabditis elegans Serpentine re...    26   5.0  
AF026213-4|AAB71305.2|  458|Caenorhabditis elegans Cell death ab...    26   5.0  
AF304119-1|AAG50232.1|  326|Caenorhabditis elegans seven transme...    26   6.6  
AF068718-6|AAC17769.2|  326|Caenorhabditis elegans Hypothetical ...    26   6.6  

>Z73978-2|CAA98292.2|  728|Caenorhabditis elegans Hypothetical
           protein ZC302.1 protein.
          Length = 728

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = -2

Query: 240 NTNIIEVIPQHTETLSQCVSFHITYYHLKLNVTRPIRSALHNDSNSRTSYLFIHNIIEIS 61
           N   +E +   +   +Q V  H+ YY   LNV  PI +   N  +     L   +++  S
Sbjct: 140 NPIALEFLSDASVNFNQSVFGHVNYYDQNLNVGLPIFTIHGNHDDLSGKGLTALDLLHES 199

Query: 60  LLVLLYTLPININYFSLS 7
            LV L+    NI  F +S
Sbjct: 200 GLVNLFGKHSNIQEFIVS 217


>U88314-1|AAF99885.1|  342|Caenorhabditis elegans Hypothetical
           protein C46H11.6 protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 219 IPQHTETLSQCVSFHITYYHLKLNVTRPIRSALHNDSNSRTSYL 88
           IPQ+ ET++  VSF I     + +V +P    +  + NS  S+L
Sbjct: 21  IPQNVETVNMTVSFKID----EKDVGKPANEVIRINENSMVSFL 60


>AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine
           receptor, class w protein91 protein.
          Length = 350

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 159 LKLNVTRPIRSALHNDSNSRTSYLFIHNIIEISLLV 52
           L +N+T+ +  + HND      Y FI  +  IS+ V
Sbjct: 2   LSINITQNLFPSFHNDERLLIFYSFIAKLSRISIHV 37


>AF039053-6|AAC25874.2|  287|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 21 protein.
          Length = 287

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 246 YNNTNIIEVIPQHTETLSQCVSFHITYYHLKLNVTRPIRSAL 121
           +NN N + +I      L    S  I+YY +K+N   PI +AL
Sbjct: 202 FNNANRLALIDAAIIFLFDISSSIISYYVIKINNGGPITAAL 243


>AF026213-4|AAB71305.2|  458|Caenorhabditis elegans Cell death
           abnormality protein 8 protein.
          Length = 458

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = -2

Query: 114 DSNSRTSYLFIHNIIEISLLVLLYTLPININYF 16
           + N+R  YL  +++  I ++++ + LP+++N F
Sbjct: 339 EGNTRWRYLTAYSVEFIEMMLVCWLLPLSLNTF 371


>AF304119-1|AAG50232.1|  326|Caenorhabditis elegans seven
           transmembrane protein protein.
          Length = 326

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -2

Query: 165 YHLKLNVTRPIRSALHNDSNSRTSYLFIH-NIIEISLLVLLYTLPININY-FSLSC 4
           +HL L   RP++  +   + S T  +F+   ++ +S  V+    P++I Y +S  C
Sbjct: 246 FHLALEGKRPLKEMIVRIATSPTHLIFLSITMLMLSFGVIAIIAPLDIPYRWSFLC 301


>AF068718-6|AAC17769.2|  326|Caenorhabditis elegans Hypothetical
           protein R01B10.5 protein.
          Length = 326

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -2

Query: 165 YHLKLNVTRPIRSALHNDSNSRTSYLFIH-NIIEISLLVLLYTLPININY-FSLSC 4
           +HL L   RP++  +   + S T  +F+   ++ +S  V+    P++I Y +S  C
Sbjct: 246 FHLALEGKRPLKEMIVRIATSPTHLIFLSITMLMLSFGVIAIIAPLDIPYRWSFLC 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,801,564
Number of Sequences: 27780
Number of extensions: 74213
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)