Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C19
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    27   1.8  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    27   1.8  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   3.1  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    26   4.1  
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    25   5.4  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    25   7.2  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   9.5  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    25   9.5  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    25   9.5  

>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 327 YEFVTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYDIS 461
           Y F+T L+  ++++ +E + +    +++P    S    VPVY IS
Sbjct: 558 YRFLTQLSKSLLMEISEEDEIYLYELERPYEDGSDDILVPVYHIS 602


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 447 QGPMQTKILEKPVYQQIPRSLHSFHLVSLLPKTSE 343
           +GP+ + I + PV       +H+F L  L+P  SE
Sbjct: 177 EGPVSSSIQDVPVMSTEQPRMHTFSLSELVPLLSE 211


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 207 DAPMGSFHVFLQERGPSVSCQNVSWYIHRLKLHRIQVLE 91
           DAP  + ++ L     S+  + +SWY+  ++LH +Q +E
Sbjct: 200 DAPNSNRNLLLNN---SMLQEKISWYLDTVELHLLQEIE 235


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
            Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 93   ECLALLDYLSYVQQQPVQNQRRKCEI 16
            +C ALL  L + ++  V+NQR K E+
Sbjct: 978  QCAALLSCLVFQEKSEVENQRMKEEL 1003


>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = -3

Query: 502 WE*LQSYGSWSNRLEISYTGTDANEDS*KAGLSTDSAFTAFVSFGFTTTKDVRGVTNSYF 323
           WE  Q Y    +  E + T T A + S   G S  + +T  +SF F T+ DV    + Y 
Sbjct: 68  WESPQQYSEIEDFFESTQTCTIAQKVSTMQGKSLLNIWTKSLSF-FVTSTDVFKYLDEYE 126

Query: 322 R 320
           R
Sbjct: 127 R 127


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -1

Query: 387 LHSFHLVSLLPKTSEV*QIHTSELTLKLSFQDCFPYSCLRREYQRHLFRPII 232
           L+ + ++   P+ S   ++  S+   K SF   FP SC + +    +  P+I
Sbjct: 27  LNDYEILLESPEDSHAYRVSKSKTLEKASFTKVFPPSCTQLDVFSTICAPLI 78


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 184 CFSTGTGTFSFLSKCLLVY 128
           C  TGTG     SKC+ +Y
Sbjct: 684 CLQTGTGVKPDTSKCVAIY 702


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 318 ALKYEFVTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASV 443
           A   E  TP  +L V  P + NA N+ +    +     FAS+
Sbjct: 519 ATPLELATPFANLNVSSPLDRNATNSSNTLNGSAMNDYFASL 560


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 252 HLFRPIIVLLLDTPRDAPMGSFHVFLQERGPSVS 151
           H     IV  +     AP   F +F+QE G SVS
Sbjct: 6   HNLEDPIVRAIRQKNQAPSHDFTIFVQEDGSSVS 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,750
Number of Sequences: 5004
Number of extensions: 46868
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)