Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C19
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51...    31   0.77 
05_05_0199 - 23165776-23166259,23166356-23167128,23167633-231678...    29   2.3  
10_08_0674 + 19788198-19789817                                         27   7.2  

>01_01_0066 -
           513578-513730,513809-513920,514000-514163,514369-514521,
           514598-514736,514823-514923,514995-515666,515953-516038,
           516112-516777,516874-517128,517231-517358,518645-518799,
           518880-519133,519186-519260,519324-519399,519511-519644,
           519871-520153,520692-520850,520940-521038,521142-521310,
           521423-521653,522002-522114,524179-524310,524389-524469,
           525641-525763
          Length = 1570

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +3

Query: 117 LDDGYTRRHFDKKLKVPVPVEKHENFPLERLWAYLTIKQLLDEKDA 254
           LD G  R+ F +K++ P   + H   PLE          L D KDA
Sbjct: 416 LDIGLKRKPFPRKMEDPTSADAHHGGPLENHGILGASASLYDNKDA 461


>05_05_0199 -
           23165776-23166259,23166356-23167128,23167633-23167869,
           23167973-23168197
          Length = 572

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 36  GSELVVAGRTINNPTELDTQVLGFCGVLDDGYTRRHFDKKL 158
           G  LV   RT+  P  +  Q +    +LDDGY  R + +K+
Sbjct: 365 GVSLVAGNRTVREPRVV-VQTMSDIDILDDGYRWRKYGQKV 404


>10_08_0674 + 19788198-19789817
          Length = 539

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 537 YWYEVSAVNCGLGSDCRATVPGLTV 463
           +WYE+  + CGL ++ RATV  + +
Sbjct: 297 WWYEIMILLCGLLANPRATVASMGI 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,962,755
Number of Sequences: 37544
Number of extensions: 276697
Number of successful extensions: 656
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)