Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C19
         (537 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006673-3|AAF39929.1|  861|Caenorhabditis elegans Hypothetical ...    29   1.6  
U50199-1|AAA91262.1|  427|Caenorhabditis elegans Pharyngeal enha...    27   6.5  
AF160187-1|AAD42897.1|  425|Caenorhabditis elegans pharyngeal en...    27   6.5  

>AC006673-3|AAF39929.1|  861|Caenorhabditis elegans Hypothetical
           protein K09D9.11 protein.
          Length = 861

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
 Frame = -1

Query: 315 TLKLSFQDCFP-----YSCLRREYQRHLFRPIIVLLLDTPRDAPMGSFHVFLQER 166
           T+  +F++ FP     ++ +++ YQ+H  +      ++ P+  P+ SFH++++ER
Sbjct: 595 TIPWNFKETFPDKSEQFAEIQKIYQKHSKK---AFRMNVPQKFPVSSFHIWIEER 646


>U50199-1|AAA91262.1|  427|Caenorhabditis elegans Pharyngeal
           enhancer binding protein1, isoform a protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/65 (23%), Positives = 28/65 (43%)
 Frame = -1

Query: 534 WYEVSAVNCGLGSDCRATVPGLTVWKYHIQGPMQTKILEKPVYQQIPRSLHSFHLVSLLP 355
           W   + +N GL  D  +T+  L+  + H+QGP   +    P    +  +L        +P
Sbjct: 281 WAANAMLNPGL--DVLSTIAALSKHQQHVQGPSPQQAATAPTTASLSSNLSVSSFTPQMP 338

Query: 354 KTSEV 340
           K + +
Sbjct: 339 KEASI 343


>AF160187-1|AAD42897.1|  425|Caenorhabditis elegans pharyngeal
           enhancer binding protein-1 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/65 (23%), Positives = 28/65 (43%)
 Frame = -1

Query: 534 WYEVSAVNCGLGSDCRATVPGLTVWKYHIQGPMQTKILEKPVYQQIPRSLHSFHLVSLLP 355
           W   + +N GL  D  +T+  L+  + H+QGP   +    P    +  +L        +P
Sbjct: 279 WAANAMLNPGL--DVLSTIAALSKHQQHVQGPSPQQAATAPTTASLSSNLSVSSFTPQMP 336

Query: 354 KTSEV 340
           K + +
Sbjct: 337 KEASI 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,468,119
Number of Sequences: 27780
Number of extensions: 258178
Number of successful extensions: 644
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)