Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C19
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.12 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.6  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   6.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = -3

Query: 223  VRYAQRRSNGKFSCFSTGTGTFSFLSKCLLVYPSSKTPQNPST*VSSSVGLFIVRPATTS 44
            ++   R   G++SC+   T     ++  L+V+    +PQ   T  +++     VRP  T 
Sbjct: 1333 IKEVDRTDAGEYSCYVENTFGHDTVTHQLIVHAPPHSPQITLTATTTNSLTMKVRPHPTD 1392

Query: 43   SEP 35
            + P
Sbjct: 1393 NAP 1395


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 8/30 (26%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = +3

Query: 180 KHENFPLERLWAYLTIKQLLD--EKDASDI 263
           K+++ P+  +W  +T+K+L +  ++D +D+
Sbjct: 49  KNKSLPVIEIWDQMTVKELANSAKRDINDV 78


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -3

Query: 463 LEISYTGTDANEDS*KAGLSTDSAFTAFVSFGFTTTKDVRGVTNSYF 323
           L +++ G +A  D  K    T   F  F+SF F     ++     YF
Sbjct: 254 LTMTFLGLEARTDLPKVPYPTALDFFVFLSFAFIFATIIQFAVVHYF 300


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +3

Query: 327 YEFVTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYD 455
           Y FV     L+VVK  ++    A   D     E  F    +YD
Sbjct: 2   YGFVNYALELLVVKTFDSETWEAIKKDAAVNMEGQFLVRQIYD 44


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +3

Query: 327 YEFVTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYD 455
           Y FV     L+VVK  ++    A   D     E  F    +YD
Sbjct: 2   YGFVNYALELLVVKTFDSETWEAIKKDAAVNMEGQFLVRQIYD 44


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 208 RRSNGKFSCFSTGTGTFSFLSKC 140
           R  N K+      TG FS+ S+C
Sbjct: 49  RGGNKKYRALRLDTGNFSWGSEC 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,257
Number of Sequences: 438
Number of extensions: 3107
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)