Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C17
         (413 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   2.1  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   2.7  
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    21   3.6  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   3.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 405 FESKLVATGLDSVTIC 358
           F   L+ TG DS T+C
Sbjct: 762 FHPFLIPTGFDSCTVC 777


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 172 ENIALSSFSGRFFVSSIPAVTSSSHSAGRKKPSN 71
           E+  LS  +    +++I  +T+S+   GRK PS+
Sbjct: 36  EDTPLSFKNIESHLNAISQITNSTLDPGRKSPSS 69


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 120 GMELTKNLPENEERAIFSTTESGKQQLKDEYFFKSNDKISYFFE-EAALGTDGKLK 284
           G+EL KN+P+  E      +E  K+       +  ++K  Y+   EA    DG  K
Sbjct: 62  GLELKKNMPDAIETDCSKCSEKQKEGSDFIMRYLIDNKPDYWKALEAKYDPDGTYK 117


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -3

Query: 333 EGVERARPCLVKRSGQLSVSHQYRELLLRKSNLFCHYS*RSTHL 202
           EGVE   P ++K SG        R    +K  L C  S  S +L
Sbjct: 193 EGVEIRIPDVIKTSGPHKFQPLLRLPKFKKKPLLCVVSTLSCYL 236


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,833
Number of Sequences: 336
Number of extensions: 1593
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9068614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)