Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_C17
(413 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 28 0.50
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 28 0.66
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 0.87
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 27 1.2
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 27 1.2
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 1.2
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 27 1.5
SPAC24C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.5
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 6.1
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 24 8.1
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 28.3 bits (60), Expect = 0.50
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 72 LEGFLRPAECEELVTAGMELTKNLPENEERAI 167
LEG + E V GMEL K LP++++ I
Sbjct: 636 LEGIIPALESSHAVYGGMELAKKLPKDKDIVI 667
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 27.9 bits (59), Expect = 0.66
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 153 EERAIFSTTESGKQQLKDEYFFKSNDKISYFF 248
EERA+++ S Q L D YF +D Y F
Sbjct: 517 EERALYNEQMSSAQSLVDNYFNNDHDLSRYGF 548
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 0.87
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = +3
Query: 33 TIKNQLEQDGYAILEGFLRPAECEE-----LVTAGMELTKNLPENEERAIFSTTESGKQQ 197
T++NQLE + E E +E L+ A + T+N E AI E K++
Sbjct: 899 TVRNQLEIQTTELKERLKFMEERQENLQSKLIAANKDTTQNPDNVEVEAISIELERTKEK 958
Query: 198 LKDEYFFKSNDKISYFFEEAAL 263
L+ KSN + Y E L
Sbjct: 959 LRMAELEKSNIQQKYLASEKTL 980
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 27.1 bits (57), Expect = 1.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 127 SLQRIYLKMRKELYSPPLNLENSN 198
SLQRIY K+ +S P++ ++SN
Sbjct: 320 SLQRIYQKLTSNSWSSPVSYDDSN 343
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 27.1 bits (57), Expect = 1.2
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 87 RPAECEELVTAGMELTKNLPENEERAI-FSTTESGKQQLKDEYFFKSND-KISY 242
RP+E +++ LT++ E +RAI S E+ K KD+ N+ ISY
Sbjct: 287 RPSEANVVISQDQHLTEDEDEELKRAIAISLEEAQKSSQKDDNVTAPNNMNISY 340
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.1 bits (57), Expect = 1.2
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Frame = +3
Query: 45 QLEQDGYAILEGFLRPAECEELVTAGMELTKNLPEN---EERAI--FSTTESGKQQ-LKD 206
QLEQ+ YA + + R EEL+ GM + N EN EE I F TE K + D
Sbjct: 287 QLEQELYAFEDDYSRIQNDEELLKVGM-IHLNKSENRTVEEMKIGDFGNTEEAKDVCVSD 345
Query: 207 EYFFKSNDK 233
E N K
Sbjct: 346 EDIHNVNIK 354
>SPAC1610.04 |mug99||meiotically upregulated gene
Mug99|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 26.6 bits (56), Expect = 1.5
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 165 IFSTTESGKQQLKDEYFFKSNDKISYFFEEAALGTDGK 278
I S S KQ +KDEY KS ++S+ E + D K
Sbjct: 329 IESLPASLKQLIKDEYLQKSKLELSFILGELSKNGDDK 366
>SPAC24C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.4 bits (53), Expect = 3.5
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +3
Query: 30 DTIKNQLEQDGYAILEG----FLRPAECEELVTAGMELT 134
DT L Q ++IL+ FL E E VTA ELT
Sbjct: 9 DTSAELLSQQDFSILQSRLLEFLASQEARETVTASKELT 47
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 24.6 bits (51), Expect = 6.1
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = -1
Query: 284 FQFPISTESCFFEKVTYFVITLKEVLIFKLLFSRFSGGEYSS 159
F+ S + F +TY ++++ + KL+FSR SGG +++
Sbjct: 3516 FRKNFSYQYACFSFITY-ILSINNRIPAKLVFSRDSGGVWTT 3556
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 24.2 bits (50), Expect = 8.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 305 KQGRARSTPSSSYIQMLTHIVTESRPVATSLD 400
K+GR +T +SS +TH V S V S D
Sbjct: 148 KEGRQLTTENSSDTSSMTHPVQPSPSVLGSFD 179
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,639,260
Number of Sequences: 5004
Number of extensions: 30423
Number of successful extensions: 96
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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