Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C17
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0861 - 28348669-28348711,28349471-28349557,28349640-283497...    60   5e-10
05_05_0192 - 23128460-23128502,23129130-23129216,23129299-231294...    34   0.052
03_05_1156 - 30814037-30814190,30814277-30815166                       28   2.6  
02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547...    28   2.6  
02_01_0179 - 1227573-1227803,1227916-1228138,1228159-1228185,122...    27   4.5  
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774...    27   5.9  
08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729           27   5.9  
02_05_0426 - 28881671-28881753,28882130-28882621,28882802-288828...    27   7.8  

>03_05_0861 -
           28348669-28348711,28349471-28349557,28349640-28349784,
           28350832-28350900,28351147-28351207,28351375-28351493,
           28351659-28351713
          Length = 192

 Score = 60.5 bits (140), Expect = 5e-10
 Identities = 34/90 (37%), Positives = 50/90 (55%)
 Frame = +3

Query: 51  EQDGYAILEGFLRPAECEELVTAGMELTKNLPENEERAIFSTTESGKQQLKDEYFFKSND 230
           + +GY +L  F    E   +     EL        +  +FST +   +Q+K+++FFKS +
Sbjct: 16  DANGYLVLGSFSSAEEVRAMRDRMAELVDGFDGAGD--VFSTKDH--RQVKNDFFFKSAE 71

Query: 231 KISYFFEEAALGTDGKLKVDPSVSLNKVGH 320
            IS+FFEE A G DG LK    +S+NKVGH
Sbjct: 72  NISFFFEEKAFGDDGCLKQAKELSINKVGH 101


>05_05_0192 -
           23128460-23128502,23129130-23129216,23129299-23129443,
           23130812-23130872,23131046-23131164,23131320-23131374
          Length = 169

 Score = 33.9 bits (74), Expect = 0.052
 Identities = 14/30 (46%), Positives = 24/30 (80%)
 Frame = +3

Query: 165 IFSTTESGKQQLKDEYFFKSNDKISYFFEE 254
           +FST +   +Q+K+++FFKS + IS+FFE+
Sbjct: 52  VFSTKDH--RQVKNDFFFKSAENISFFFED 79


>03_05_1156 - 30814037-30814190,30814277-30815166
          Length = 347

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 254 FFEKVTYFVITLKEVLIFKLLFSRFSGGE 168
           F  KV  +++  +EVL FK L +   GGE
Sbjct: 141 FVSKVADYLVEKQEVLFFKALHTNLKGGE 169


>02_05_0024 +
           25152090-25153151,25153232-25154145,25154499-25154709,
           25154757-25154921
          Length = 783

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -2

Query: 133 VSSIPAVTSSSHSAGRKKPSNIA*P 59
           VSS+PA+  SS S  RKKP  +A P
Sbjct: 377 VSSMPAINLSSFSPPRKKPRILAYP 401


>02_01_0179 -
           1227573-1227803,1227916-1228138,1228159-1228185,
           1228519-1228651,1228748-1228865,1229357-1229451,
           1229886-1230048
          Length = 329

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 255 AALGTDGKLKVDPSVSLNKVGHAL 326
           +ALG DG L +D ++SL    HA+
Sbjct: 132 SALGDDGVLDIDTTISLETTWHAM 155


>11_04_0007 -
           12074472-12074538,12074908-12075116,12077202-12077463,
           12077547-12078043,12078651-12078719,12079258-12079363,
           12080272-12080295,12081184-12081242,12081383-12081520
          Length = 476

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 123 MELTKNLPENEERAIFSTTESGKQQLKDEYF 215
           ++LT     NEE  I   TE+ KQQ+KD  F
Sbjct: 321 IKLTLTTMINEEAEISEVTEAVKQQVKDAKF 351


>08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729
          Length = 559

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 274 GN*KLTRAFH*TRSGTLYTFFILYSDVNTYSDRVKTGCHELGFK 405
           GN ++    H    G + T    Y D N +  R++ GC   G K
Sbjct: 67  GNVRMALRLHPVVKGAV-TMLSAYGDFNAFPRRLREGCQRTGVK 109


>02_05_0426 -
           28881671-28881753,28882130-28882621,28882802-28882864,
           28883251-28883440,28883534-28883642,28883952-28884363,
           28884967-28885196,28885294-28885403
          Length = 562

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -2

Query: 184 DSVVENIALSSFSGRFFVSSIPAVTSSSHSAGRKKPSN 71
           D   EN  LSSFSG     SIP + SS  SA   + +N
Sbjct: 499 DLADENANLSSFSGTQLSISIP-MASSDFSAASSRSTN 535


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,107,224
Number of Sequences: 37544
Number of extensions: 172233
Number of successful extensions: 456
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)