Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C17
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-7|CAB54355.1|  288|Caenorhabditis elegans Hypothetical ...    79   1e-15
AL132848-2|CAB60385.2|  333|Caenorhabditis elegans Hypothetical ...    28   2.3  
AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical ...    28   3.1  
U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AF003135-10|AAK18986.2|  183|Caenorhabditis elegans Hypothetical...    27   5.4  
AC084158-26|AAM15621.2|  216|Caenorhabditis elegans Hypothetical...    27   7.1  
AC084158-25|AAM15620.2|  384|Caenorhabditis elegans Hypothetical...    27   7.1  
Z93383-10|CAB07632.1|  286|Caenorhabditis elegans Hypothetical p...    26   9.4  
AC006795-7|AAF59497.2|  199|Caenorhabditis elegans Hypothetical ...    26   9.4  

>AL110479-7|CAB54355.1|  288|Caenorhabditis elegans Hypothetical
           protein Y105C5B.9 protein.
          Length = 288

 Score = 79.0 bits (186), Expect = 1e-15
 Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
 Frame = +3

Query: 36  IKNQLEQDGYAILEGFLRPAECEELVTAGMELTKNLPENEE-RAIFSTTESGKQQLKDEY 212
           ++ + E+DG+ ++E      E +E+  +  ++  ++   E  +++FST +  K    D Y
Sbjct: 4   LREKFERDGFVVVENVFNDQEIDEMKKSISKIVNDMDLAEHPKSVFSTYDEDKHAA-DSY 62

Query: 213 FFKSNDKISYFFEEAALGTDGKLKVDPSVSLNKVGHALHLLHPIF 347
           F  S+DKI +FFEE A+  DG+L V    +LNK+GH LH L P F
Sbjct: 63  FLNSSDKIRFFFEEGAVDKDGELTVPKDKALNKIGHGLHFLDPTF 107


>AL132848-2|CAB60385.2|  333|Caenorhabditis elegans Hypothetical
           protein Y47H10A.3 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
 Frame = +3

Query: 87  RPAECEELVTAGMELTKNLPENEERA-IFSTTE--SGKQQLKDEYFF-KSNDKISYFFE 251
           RP+E EE V + + L K+  +N+E + IFS +E  S  +  +DE F  K  D + +F +
Sbjct: 274 RPSEGEENVRSFLNLVKDQMKNDEDSFIFSKSEDDSNWKFCRDEEFVSKFRDVVLHFID 332


>AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical
           protein Y59C2A.3 protein.
          Length = 759

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 150 NEERAIFSTTESGKQQLKDEYFFKSNDKISYFFE 251
           +EE+  ++  +   Q+ +DE FF +ND   + FE
Sbjct: 380 DEEKVAYNRRKYETQKRRDEGFFMANDSSMFMFE 413


>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical
           protein B0416.1 protein.
          Length = 1203

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 184 DSVVENIALSSFSGRFFVSSIPAVTSSSHSAGRKKPSN 71
           DS        S SGR FV S+ +V+   HS G ++ S+
Sbjct: 861 DSQHNRSTAKSVSGRQFVPSLGSVSEVDHSTGEEQSSD 898


>AF003135-10|AAK18986.2|  183|Caenorhabditis elegans Hypothetical
           protein W03F11.3 protein.
          Length = 183

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 124 WSLQRIYLKMRKELYSPPLNLENSNLKMSTSLRV 225
           W L+R+Y K+   L SP  N++     +ST + +
Sbjct: 150 WPLERLYTKLNISLVSPINNVQAPATTVSTKIAI 183


>AC084158-26|AAM15621.2|  216|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.32b protein.
          Length = 216

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +3

Query: 66  AILEGFLRPAECEELVTAGMELTKNLPENEERAIFSTTE 182
           A  E F       E VT  +  TKN P     AIFS T+
Sbjct: 101 ATSEEFAHSVSSREFVTDIVHKTKNSPRRANDAIFSLTD 139


>AC084158-25|AAM15620.2|  384|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.32a protein.
          Length = 384

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +3

Query: 66  AILEGFLRPAECEELVTAGMELTKNLPENEERAIFSTTE 182
           A  E F       E VT  +  TKN P     AIFS T+
Sbjct: 269 ATSEEFAHSVSSREFVTDIVHKTKNSPRRANDAIFSLTD 307


>Z93383-10|CAB07632.1|  286|Caenorhabditis elegans Hypothetical
           protein F54B8.11 protein.
          Length = 286

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -1

Query: 404 LNPSSWQPVLTLSLYVLTSEYRMKKV*SVPDLV----**NARVNFQFPISTESCFF 249
           L+ S  Q VL ++LY+L S +  KK+   PD++       A V + F +S +  +F
Sbjct: 11  LSISFSQIVLYINLYLLFSIFHSKKIGYKPDMILIYWRIAADVGYSFTVSIQKTYF 66


>AC006795-7|AAF59497.2|  199|Caenorhabditis elegans Hypothetical
           protein Y50D4B.1 protein.
          Length = 199

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = +3

Query: 165 IFSTTESGKQQLKDEYFFKSNDKISYFFEEAALGTDGK 278
           ++S +   K++ +   FF+ + K+ +FF   ++   GK
Sbjct: 22  LYSLSNCRKRKKRKNIFFRQSTKVCFFFNRKSVQKTGK 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,845,529
Number of Sequences: 27780
Number of extensions: 160157
Number of successful extensions: 484
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)