Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C15
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos...    88   8e-19
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    38   0.001
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch...    33   0.017
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    30   0.16 
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    30   0.16 
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    29   0.28 
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.1  
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr...    27   1.5  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    26   2.7  
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    26   3.5  
SPAC222.08c |||imidazoleglycerol-phosphate synthase |Schizosacch...    25   4.6  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    25   4.6  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    25   8.1  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    25   8.1  
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    25   8.1  

>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 87.8 bits (208), Expect = 8e-19
 Identities = 56/138 (40%), Positives = 77/138 (55%), Gaps = 8/138 (5%)
 Frame = +2

Query: 98  DKVAILDAGSQYGKVIDRRVRELCVESDILPLDTP--AYHLKETGYRAIIISGGPNSVYA 271
           D + ILD GSQY  +I RR+RE+ V +++LP      A   K  G   +I+SGGP SVY 
Sbjct: 19  DTILILDFGSQYSHLIARRLREIHVYAELLPCTQKIEALPFKPIG---VILSGGPYSVYD 75

Query: 272 EDAPRYDSDIFKIGLPVLGICYGMQMLNKEFGGSVLRKEAREDG------QYEVEIETTC 433
           + AP  D  +F++G+PVLGICYGMQ +    G  V     RE G      + E++ E   
Sbjct: 76  DIAPHVDPAVFELGVPVLGICYGMQEIAWLNGRCVEPGIEREYGPATVSMEPEIKTEVFK 135

Query: 434 PLFNRLEKLQPVLLTHGD 487
             FN + K   V ++HGD
Sbjct: 136 SFFNSMPKEFEVWMSHGD 153


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
 Frame = +2

Query: 101 KVAILDAGSQYGKVIDRRVRELCVESDILPLDTPAYHLKETGYRAIIISGGPNSVYAED- 277
           ++ ++D G +Y ++  R      VE  ++P D   Y   +  Y  + IS GP      D 
Sbjct: 264 RILVIDVGMKYNQI--RCFLNRGVELLVVPWD---YDFTKETYDGLFISNGPGDPSLMDL 318

Query: 278 -APRYDSDIFKIGLPVLGICYGMQMLNKEFGGSVLRKEAREDGQYEVEIETTCPLFNR 448
              R    +    +PV GIC+G Q++ +  G S  + +    G     I  TC +  R
Sbjct: 319 VVDRVKRVLESKTVPVFGICFGHQIMARAAGASTTKMKFGNRGH---NIPCTCMISGR 373


>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 237

 Score = 33.5 bits (73), Expect = 0.017
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +2

Query: 314 LPVLGICYGMQMLNKEFGGSV 376
           +P+LGIC G Q+LN  FGGS+
Sbjct: 78  IPILGICRGCQVLNVYFGGSL 98


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 30.3 bits (65), Expect = 0.16
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = +2

Query: 128 QYGKVIDRRVRELCVESDILPLDTPAYHLKETGYRAIIISGGPNSVYAEDAPRYDSDIFK 307
           QY   +++R   +   +D + +D     L++     +++S GP    A D    +  I +
Sbjct: 43  QYLSNLEKRYPIMVFRNDEITVD----ELEKLNPLKLVLSPGPGHP-ARDGGICNEAISR 97

Query: 308 IG--LPVLGICYGMQMLNKEFGGSV 376
               +P+LG+C G+Q + +  GG V
Sbjct: 98  FAGKIPILGVCMGLQCIFETMGGKV 122


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 30.3 bits (65), Expect = 0.16
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +2

Query: 227 YRAIIISGGPNSVYAEDAPRYDSDIFKIGLPVLGICYGMQMLNKEFGGSVLR 382
           + AI++  GP   +  +     + I+++ +PV+GIC G Q L    G ++ R
Sbjct: 55  FDAIVVGPGPG--HPAEYSSILNRIWQLNIPVMGICLGFQSLALYHGATIER 104


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 317 PVLGICYGMQMLNKEFGGSVLRKEAREDGQYEVEIETTCPLF 442
           P LGIC GMQ+   EF  SV   E     +++ E E    ++
Sbjct: 398 PYLGICLGMQVAVIEFARSVCGIEGAFSEEFDKECENNVVVY 439


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -1

Query: 423 SISTSYCPSSLASFRRTDPPNSLFNICIP*HMPRTGR-PILNISESYRGASSAYTE 259
           ++S +    SLAS  +T P  +   +C+P + P TG  P+++  ++ RG   A  E
Sbjct: 143 NVSKASSNLSLASLAKTQPERATPEVCVPLN-PDTGSVPLIHPEQTDRGLPYAPDE 197


>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 337 WYANVEQGVWRIRSTEGGKGRR 402
           WY+ +  G+WR++    G+GR+
Sbjct: 83  WYSILRSGLWRLKYKLDGEGRK 104


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 231 VRLSYPVALTLCTPRMRRGMTRIYSKSVF 317
           V  SY V LT C   MRR +    +  VF
Sbjct: 687 VNASYEVGLTFCNSHMRRALGACTTPDVF 715


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
 Frame = +2

Query: 92  GRDKVAILDAGSQYGKVIDRRVRELCVESDILPLDTPAYHLKETGYRAIIISGGPNSV-- 265
           G   +A++D G +    I R +        + P D P  ++  + Y  I ++ GP     
Sbjct: 222 GMLNIAVIDCGVKEN--ILRSLVSRGASVTVFPFDYPIQNVA-SNYDGIFLTNGPGDPTH 278

Query: 266 YAEDAPRYDSDIFKIGLPVLGICYGMQMLNKEFGGSVLR 382
             +        +     P++GIC G Q+L    G   ++
Sbjct: 279 LTKTVNNLRELMNTYNGPIMGICMGHQLLALSTGAKTIK 317


>SPAC222.08c |||imidazoleglycerol-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 311 GLPVLGICYGMQMLNKEFGG 370
           GLP+ G C GM +L+K+  G
Sbjct: 94  GLPIWGTCAGMILLSKKSRG 113


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 188 PLDTPAYHLKETGYRAIIISGGPNSVYAEDAPRYDSDIFKIGLPVL 325
           P  +  Y   E GYRA+I  GG  S +++      + I   G+PV+
Sbjct: 180 PTSSGKYVFYEDGYRALICQGGLLSYFSKGTQSRRTSI--KGMPVV 223


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 227 YRAIIISGGPNSVYAEDAPRYDSDI 301
           YRAI++SGG +S+YA    R + +I
Sbjct: 294 YRAIVLSGG-SSMYAGLPSRLEKEI 317


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +2

Query: 149 RRVRELCVESDILP--LDTPAYHLKET 223
           + + ELC+E D+LP  LD   Y L  T
Sbjct: 6   KAIIELCIEEDLLPKSLDVLEYLLSTT 32


>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 185 LPLDTPAYHLKETGYRAIIISGGPN 259
           LP   P YH + +      ++GGPN
Sbjct: 180 LPPKRPPYHYESSSTSISFVNGGPN 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,010
Number of Sequences: 5004
Number of extensions: 42862
Number of successful extensions: 139
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)