Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C14
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.1  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    27   2.5  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    26   3.3  
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ...    26   4.4  
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa...    26   4.4  
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...    25   5.8  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -2

Query: 535 HFLKISKTS*VLKTSHLNKISIVSKYVHFWSSGDCFKCSSMLLQGVV 395
           + L + KTS  L +  ++ + I      FWS+ D FK  S  L+ ++
Sbjct: 253 YLLNLVKTSESLSSQQMSCLRICCNSSSFWSAADSFKEVSSFLKNLL 299



 Score = 26.6 bits (56), Expect = 2.5
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -3

Query: 348 TIFYIPAESTLSHAWLLNLINTDLIQRSSCLQGA*PHCNKQQKNKRDHKFNHFHIVSI 175
           T F+   + T S  W+LN  +  L   +SC+Q A      +   K  + F  F I  +
Sbjct: 36  TFFWFAHDETPSFKWVLNAYHERLRSCTSCIQ-AYYELRNESLAKGSYSFTGFSITDL 92


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 375 SCALP*TTTPWSNMLLHLKQSPEDQ 449
           SC    T  PWSN+L H+K    D+
Sbjct: 290 SCGWKQTAFPWSNLLHHIKLGMLDE 314


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -3

Query: 300 LNLINT--DLIQRSSCLQGA*PHCNKQQK 220
           LNLIN   D    S CL+   P CNK +K
Sbjct: 412 LNLINILEDSAAASRCLESIEPLCNKHEK 440


>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 73  FIITCLYKRGSVSVWSYITGI 135
           F   CL K G+ +VW Y T I
Sbjct: 123 FYSECLRKYGNANVWKYFTDI 143


>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 313 RQGGLCRYIEDCDPGNLVHVVVALCPKQR 399
           RQ  LC   E CD    V +V ALC + +
Sbjct: 63  RQAHLCVLCESCDQEAYVKLVEALCAESQ 91


>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +1

Query: 313 RQGGLCRYIEDCDPGNLVHVVVALC 387
           RQ  LC   E CD    V +V ALC
Sbjct: 60  RQAHLCVLCESCDQEAYVKLVEALC 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,338,976
Number of Sequences: 5004
Number of extensions: 48217
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)