Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_C13
(419 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 30 0.13
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 2.1
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 2.1
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 26 2.1
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 26 2.7
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo... 25 3.6
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 25 4.8
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 25 6.3
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 25 6.3
SPBC31F10.09c |nut2|med10|mediator complex subunit Med10|Schizos... 25 6.3
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 24 8.4
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 24 8.4
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 30.3 bits (65), Expect = 0.13
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 93 SLTYLLKRILKKKHPANVASAPKLLRERW 179
SLTY RI+ KKH + S P RE W
Sbjct: 330 SLTYPEMRIINKKHQGFIPSTPAEFRECW 358
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 26.2 bits (55), Expect = 2.1
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -1
Query: 332 ENWSMIHSFYCRQLFVLCTYTVQKILTS*RNHS 234
EN++ +H + RQ ++ YT+ ++ T+ R S
Sbjct: 1248 ENFAYVHPWLLRQQYIDTLYTIHQVPTTQRESS 1280
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 2.1
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +2
Query: 206 KSPTFVLLALSGFFTMLGFFVPYMYITQRAAYNKMS 313
+S F + L FF+M FF+ + ++ +Y+ ++
Sbjct: 597 QSLVFAIEKLVNFFSMANFFLAFYFVCNATSYSSLN 632
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 2.1
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 50 STVH-FKNFTRYHLAVTHVPTKEDTQEETSGKC 145
S +H F++F YHL H PT D Q + +C
Sbjct: 323 SQIHYFEDFGYYHLPWYHCPT--DVQSHATARC 353
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.8 bits (54), Expect = 2.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 125 EETSGKCRFCPEAVKRALATMLDVSLF 205
EET C+ AVK ALA +D+ L+
Sbjct: 250 EETLQGCKLISRAVKTALAETIDMGLW 276
>SPAC7D4.06c |alg3||dolichol-P-Man dependent
alpha|Schizosaccharomyces pombe|chr 1|||Manual
Length = 406
Score = 25.4 bits (53), Expect = 3.6
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 305 KMSESSTNFLVSAIGVSNIIGRILC 379
K+ ++ NF+ +A+ SN+IG ILC
Sbjct: 310 KLQLATPNFIFTALATSNLIG-ILC 333
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 25.0 bits (52), Expect = 4.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 67 LEVYCGSLVKLAPKNISSR 11
LE YCGSL LAP+ +S +
Sbjct: 160 LENYCGSLHYLAPEIVSHK 178
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 24.6 bits (51), Expect = 6.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 273 YGTKNPNIVKKPLKARSTNVGDLKRLTSNI 184
YGT N + +R ++GDL+ L + I
Sbjct: 30 YGTSMDNELSSEYASRGMHIGDLENLVNEI 59
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 24.6 bits (51), Expect = 6.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 173 ALATMLDVSLFKSPTFVLLALSGFFTMLGFFVPYM 277
AL T++ + + P L+++ G F LG +VP++
Sbjct: 69 ALFTLIWIYKYIEP-HSLISIPGIFVFLGLYVPFV 102
>SPBC31F10.09c |nut2|med10|mediator complex subunit
Med10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 24.6 bits (51), Expect = 6.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 405 ILGIEDTSPHKIRPIILDTPIAETRKLVDDS 313
+ +EDT+P P LDT I + + L D S
Sbjct: 26 VYNLEDTTPSDAIPESLDTLIRDLKSLPDIS 56
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 24.2 bits (50), Expect = 8.4
Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 176 LATMLDVSLFKSPTFVLLALSGFFTMLGFFVPY-MYITQRAAYNKMSESSTNFLVSAIGV 352
LA + +F TF+ L + FT++ FF+ + +++ + + + + +IG
Sbjct: 458 LALRATIFIFSLLTFIPLPSAYLFTIIDFFMVFALFLNDKILAKPGTVHPLTYFIGSIGA 517
Query: 353 SNI 361
+
Sbjct: 518 MTV 520
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 24.2 bits (50), Expect = 8.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 329 FLVSAIGVSNIIGRILCGLV 388
F VS++ V ++G I+CG+V
Sbjct: 222 FFVSSLKVMAMVGFIICGIV 241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,726,433
Number of Sequences: 5004
Number of extensions: 33795
Number of successful extensions: 81
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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