Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C13
         (419 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0038 + 17403620-17403769,17403975-17404038,17404807-174048...    27   4.6  
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23...    27   6.1  
11_01_0208 - 1628020-1628117,1628282-1628325,1628790-1628878,162...    27   8.1  
09_02_0259 - 6385758-6386199,6387493-6387641                           27   8.1  
03_03_0039 - 13986844-13986907,13987219-13987273,13987492-139876...    27   8.1  

>05_04_0038 +
           17403620-17403769,17403975-17404038,17404807-17404865,
           17404981-17405056,17405196-17405267,17405411-17405498,
           17405617-17405872,17405972-17406087,17406757-17406977,
           17407074-17407102,17407192-17407291,17407405-17407492,
           17407640-17407874
          Length = 517

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 276 IYGTKNPNIVKKPLKARSTNVGDLKRLTSN 187
           +Y + N N+VK PL+  + ++  L R T N
Sbjct: 342 VYTSNNNNVVKAPLQDLTADIATLFRATKN 371


>05_01_0034 -
           228939-229028,229117-229230,229309-229430,229827-230056,
           230458-230537,230641-230859
          Length = 284

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 344 IGVSNIIGRILCGLVSSMPKMSP 412
           +   N IGR +   V+SMPK+SP
Sbjct: 221 VAPDNKIGRFISDAVASMPKLSP 243


>11_01_0208 -
           1628020-1628117,1628282-1628325,1628790-1628878,
           1628986-1629030,1629397-1629504,1629650-1629735,
           1629870-1629957,1630275-1630445,1630718-1630793,
           1630877-1630926,1631035-1631097,1631201-1631254,
           1631398-1631500,1631626-1631728,1632038-1632098,
           1632186-1632226,1632375-1632453
          Length = 452

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
 Frame = +2

Query: 203 FKSPTFVLLALSGFFTMLGFFVPYMYITQRAAYNKMSESSTNFLVSAIGVSNIIGR---- 370
           +K   FV +        +    P++Y   R  +   +E    F    +G S +IGR    
Sbjct: 13  YKEFLFVAITTLASSLPISSLFPFLYFMIRELHISRTEEDIGFYAGFLGASYMIGRGFAS 72

Query: 371 ILCGLVSSMPKMSPL 415
           IL G+V+      P+
Sbjct: 73  ILWGMVADRIGRKPV 87


>09_02_0259 - 6385758-6386199,6387493-6387641
          Length = 196

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 158 EAVKRALATMLDVSLFKSPTFVLLALSGFFT 250
           +A  R L   L+ +  KSPT + L L GF+T
Sbjct: 94  QAAARELLEKLNSARNKSPTKIFLVLLGFYT 124


>03_03_0039 - 13986844-13986907,13987219-13987273,13987492-13987606,
            13987652-13987774,13987962-13988015,13988352-13988411,
            13988522-13988584,13988790-13988863,13989177-13989261,
            13989376-13989456,13989764-13989856,13990275-13990339,
            13990407-13990482,13990570-13990635,13991094-13991153,
            13991233-13991322,13991755-13991817,13992502-13992625,
            13993031-13993271,13993355-13993624,13993715-13994089,
            13994178-13994381,13994455-13995136,13995231-13995279,
            13995362-13995488,13995564-13996258,13996718-13996965
          Length = 1433

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 193  VQHSGQRSLNSFGAEATFAGCFFLSILF 110
            +  SG+R+L    A  TF GCF   + F
Sbjct: 1267 MDRSGRRALLLVSASGTFLGCFLTGLSF 1294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,398,966
Number of Sequences: 37544
Number of extensions: 192558
Number of successful extensions: 476
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)