Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C12
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    26   2.3  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   5.4  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    25   7.1  

>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 293 NGVPLTHHHLKTTEHVGIRLLPFDAEFFVYGYRF 192
           NG   T H LKT E      L   A+ ++YGY +
Sbjct: 510 NGCLSTSHFLKTCEKASHMRLDVFAQQWIYGYGY 543


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 142 RKRRLRGYTSGWAAASSEDHKHLLRSPTRMPSVAI-MAIPPL 20
           R  RLR   S     S E+H+ +LR  T   + ++ +A PP+
Sbjct: 124 RSTRLRNRRSQDEEESEEEHRPILRERTSRINYSVPLAFPPV 165


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 103 AASSEDHKHLLRS-PTRMPSVAIMAIPPLSLSPA 5
           A + ED    + S P+RMP   +   PP S+ PA
Sbjct: 107 ARAKEDPNFQIHSTPSRMPPHYVQPHPPFSVFPA 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,089,910
Number of Sequences: 5004
Number of extensions: 45865
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)