Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_C12
(451 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0020 + 15515768-15517696 29 1.3
04_01_0518 - 6795833-6796450,6799940-6800164 29 1.3
10_08_0812 + 20752637-20752784,20752856-20753034,20754043-207541... 29 2.3
04_04_1596 + 34684943-34686340,34688085-34688175,34688290-346883... 28 3.0
02_01_0635 + 4765200-4766144,4766392-4767006 28 4.0
03_02_0113 + 5697089-5697245,5697983-5698056,5698217-5698296,569... 27 5.3
02_02_0637 - 12491706-12492575,12492580-12492657 27 5.3
01_03_0149 + 13194866-13195012,13196576-13196828,13197810-131981... 27 5.3
12_02_1061 - 25756366-25757567,25758692-25758797 27 7.0
04_04_0531 - 26048558-26049082 27 7.0
04_03_0397 - 15362353-15363383,15385301-15385910,15386890-153870... 27 7.0
12_02_1106 - 26134960-26135115,26135901-26136207,26136421-26137004 27 9.2
03_05_0431 + 24221881-24224586 27 9.2
>06_03_0020 + 15515768-15517696
Length = 642
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 63 GERSRCLWSSEDAAAHPLVYPLSRLLRH 146
G RCL S+ AHPL+ SRL H
Sbjct: 18 GRSRRCLLHSDPHTAHPLLVAFSRLCAH 45
>04_01_0518 - 6795833-6796450,6799940-6800164
Length = 280
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 64 ASAVGVCGPQRMLLPIHWCIPLVAF-YDTHGEIWGGTI 174
ASA G G +RM + WC+ + F YD +G+ GT+
Sbjct: 28 ASAGGYTGVRRMSIGSSWCVSSMLFEYDDNGKRVKGTL 65
>10_08_0812 +
20752637-20752784,20752856-20753034,20754043-20754126,
20754835-20755002,20757120-20757266
Length = 241
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 6 AGLKDKGGIAII--ATLGMRVGERSRCLWSSEDAAAHPLVY 122
+G+ GI I A + V E SR LW S D+A LVY
Sbjct: 68 SGMLRGAGIGAISGAVFSIEVAESSRDLWHSSDSAVWCLVY 108
>04_04_1596 +
34684943-34686340,34688085-34688175,34688290-34688354,
34688530-34688581,34688747-34688829,34688942-34689035,
34689468-34690051
Length = 788
Score = 28.3 bits (60), Expect = 3.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 123 DTPVDGQQHPLRTTNTYCARQPACQ 49
D PV+ +H L T C ++P C+
Sbjct: 690 DAPVENSEHDLNGTVNRCTKRPVCE 714
>02_01_0635 + 4765200-4766144,4766392-4767006
Length = 519
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +3
Query: 12 LKDKGGIAIIATLGMRVGERSRCLWSSEDAAAHPLVYPLSRLLRHPR 152
++ +GG+ + T+G+ G + + +A+ L + +S L+R+PR
Sbjct: 295 IQKEGGLEVPLTMGVIKGVIRDLFGAGSETSANTLQWTMSELVRNPR 341
>03_02_0113 +
5697089-5697245,5697983-5698056,5698217-5698296,
5699017-5699168,5700750-5700991
Length = 234
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +3
Query: 96 DAAAHPLVYPLSRLLRHP--RGNMGWYYS*AGTYEP 197
DA + L YP++ L +P G G+YY T+ P
Sbjct: 152 DAVGYHLSYPVATYLGYPPPTGTAGYYYGGISTFGP 187
>02_02_0637 - 12491706-12492575,12492580-12492657
Length = 315
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 120 TPVDGQQHPLRTTNTYCARQPACQAWRLWQFLP 22
TP ++ P R T+T P C +WR +LP
Sbjct: 112 TPRSSRRSPARATST--THSPFCHSWRTTPWLP 142
>01_03_0149 +
13194866-13195012,13196576-13196828,13197810-13198173,
13198283-13198501,13199888-13200002,13200697-13200948,
13201149-13201442
Length = 547
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 225 EW**SYPDMFSSFKVMVRQRNPI 293
EW SYP +F +F + VR N I
Sbjct: 424 EWILSYPSLFKTFDIFVRLSNDI 446
>12_02_1061 - 25756366-25757567,25758692-25758797
Length = 435
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +1
Query: 49 LACGLASAVGVCGPQRMLLPIHWCIPLVAFYDTHGEIWGGTILKPAPTNL 198
+ACG AV + G + + W +DTHG GG IL A T L
Sbjct: 318 VACGRRPAVVINGGEDAIHLTQWV------WDTHGGAAGGGILDAADTRL 361
>04_04_0531 - 26048558-26049082
Length = 174
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 212 FVYGYRFVGAGLRIVPPHISPWVS*KATKGIHQWMGSSI 96
+ YG + G G ++PPH W A+ +H+ +G ++
Sbjct: 117 YEYG-KVAGVGGVVIPPHELAWRGRAASLSVHEGIGRTL 154
>04_03_0397 -
15362353-15363383,15385301-15385910,15386890-15387096,
15388287-15388313,15388397-15388471
Length = 649
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 64 ASAVGVCGPQRMLLPIHWCIPLVAF-YDTHGEIWGGTI 174
ASA G +RM + WC+ + F YD +G+ GT+
Sbjct: 56 ASAGSYTGVRRMSIGSSWCVSSMLFEYDDNGKRVKGTL 93
>12_02_1106 - 26134960-26135115,26135901-26136207,26136421-26137004
Length = 348
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 69 RSRCLWSSEDAAAHPLVYPLSRLLRHPRGNMGWYY 173
R RC SS AAA P+ P R ++H + W+Y
Sbjct: 57 RLRCAASSSSAAARPMSQP--RFIQHKK-EAFWFY 88
>03_05_0431 + 24221881-24224586
Length = 901
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -3
Query: 260 TTEHVGIRLLPFDAEFFVYGYRFVGAGLRIVPPHISPW 147
+T+ + ++P DA V G RF G+R + ++ W
Sbjct: 237 STDDGDVNIVPMDAMVSVVGGRFHACGIRSLDHQVACW 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,733,939
Number of Sequences: 37544
Number of extensions: 312844
Number of successful extensions: 715
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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