Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C12
         (451 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77652-1|CAB01121.1|  254|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z77652-1|CAB01121.1|  254|Caenorhabditis elegans Hypothetical
           protein C06B3.1 protein.
          Length = 254

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 299 FIYMYLIVTGCNY--NLNIHQ*TVLNFIQIV 385
           FIY YL++TG  +  N++ ++ T+L F  I+
Sbjct: 111 FIYRYLVITGHEWVKNVSFYKLTILIFAPII 141


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
            B0024.8 protein.
          Length = 1185

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -1

Query: 103  AASSEDHKHLLRSPTRMPSVAIMAIPPLSLSPAV 2
            ++ SE+HKHL R+  +     I +I P+SL PA+
Sbjct: 1059 SSKSEEHKHLARTCIQH---TIRSIEPVSLLPAM 1089


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,492,021
Number of Sequences: 27780
Number of extensions: 259354
Number of successful extensions: 486
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)