Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C11
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    85   5e-18
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    29   0.19 
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   0.78 
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    27   0.78 
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   2.4  
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    25   3.1  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   4.1  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    24   9.6  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    24   9.6  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    24   9.6  
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    24   9.6  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 84.6 bits (200), Expect = 5e-18
 Identities = 40/85 (47%), Positives = 52/85 (61%)
 Frame = +2

Query: 29  FHPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERA 208
           F+PE K HG  +   RHVGDLGN E D   + K    D  +++ GA+ I+GR +V+H   
Sbjct: 65  FNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHAGE 124

Query: 209 DDFGRTDHPDSRKTGNAGGRVACGV 283
           DD G+    +S KTGNAG R ACGV
Sbjct: 125 DDLGKGTSEESLKTGNAGARNACGV 149


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 29.5 bits (63), Expect = 0.19
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 285 MTPQATRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVM 154
           +TP   +PPA PV  E+    +P ++  +    + P+ P APV+
Sbjct: 510 ITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVV 553



 Score = 27.9 bits (59), Expect = 0.59
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -3

Query: 291 IPMTPQATRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVMARCG 142
           +P  P   + PA+PV  E+    +P ++       ++P+ P  PV+   G
Sbjct: 643 VPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEAG 692



 Score = 26.2 bits (55), Expect = 1.8
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 291 IPMTPQATRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVM 154
           +P  P   + PA+PV  E+    +P  +  +    ++P+ P APV+
Sbjct: 553 VPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVV 598



 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 288 PMTPQATRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVM 154
           P  P   +PP  PV  E+    +P  +  +    ++P+ P  PV+
Sbjct: 584 PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVV 628



 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 288 PMTPQATRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVM 154
           P  P   + PA+PV  E+    +P ++       ++P+ P  PV+
Sbjct: 614 PEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVV 658


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 0.78
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 38  ENKE-HGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAI 157
           ENK  HG   D+     D  + E  K Y+SKI+ ID  + I
Sbjct: 85  ENKSVHGMTIDDIMDEEDRADQELSKVYTSKINTIDTSIPI 125


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 27.5 bits (58), Expect = 0.78
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 237 IREKPATLVDASPAVSSEYCKTSLYLFIFYVL 332
           + EK   L D S       CKTS+Y+ +F+ L
Sbjct: 119 VLEKLLLLQDYSSWTHGNSCKTSIYILLFFAL 150


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 77  HVGDLGNAEFDKNYSSKIDMIDPHL 151
           HV + GN  FD  + S + ++D  L
Sbjct: 102 HVNEDGNVAFDSEFDSNLKLLDSEL 126


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 156 LPEHTGFSAGLWFYTSGLMISAALTTQIREKPAT 257
           LP+   F+ G  F  +GL     L  Q++ KP T
Sbjct: 134 LPDGVSFNEGAGFGIAGLTAWEVLVRQMKVKPGT 167


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 285 MTPQATRPPALPVFLESGWSVRPKSSARS 199
           +TP+  R   LP F    WS R  S  RS
Sbjct: 685 VTPEYLRTDVLPEFFHCFWSRRMASDRRS 713


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 206 ADDFGRTDHPDSRKTGNAG 262
           ADD G   HP  RKT + G
Sbjct: 280 ADDLGSLPHPIFRKTKHCG 298


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 122 SKIDMIDPHLAITGAHGILGRAVVLHERADDFGRTDHPDS 241
           +KI +  P   ++    +L R    H   D F R DHP+S
Sbjct: 165 TKIKLKPPQSPLSPTTSLLARKCK-HIDLDTFSRLDHPNS 203


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 87  SPTWRFSSLGWP 52
           S  W FS+LGWP
Sbjct: 583 SGLWPFSTLGWP 594


>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
 Frame = +2

Query: 8   LWLHRF-SFHPENKEHGHPSDENRHVG-----DLGNAEFDKNYSSKIDMIDPHLAITGAH 169
           +W H   S HPE +   HP     H       DLG   F   + ++    DP + +    
Sbjct: 112 VWHHEGKSLHPERQTSSHPHQVTAHKHLVCSVDLGLDRF-SIFDAEDTSSDPVVVVNVPA 170

Query: 170 GILGRAVVLHE 202
           G   R +V H+
Sbjct: 171 GYGPRHIVFHK 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,429,681
Number of Sequences: 5004
Number of extensions: 26209
Number of successful extensions: 97
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)