Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_C11
(386 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 103 4e-23
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 98 2e-21
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 89 1e-18
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 77 6e-15
12_02_0445 - 19153580-19154269 29 1.3
12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576... 29 1.3
09_06_0081 + 20745627-20748144,20748211-20748308 29 1.3
07_01_0384 + 2861819-2862169 29 1.3
10_08_1058 + 22608852-22609172,22609257-22610651 29 1.7
08_02_1227 - 25398063-25398302,25398629-25398790,25399019-253991... 29 1.7
11_01_0763 + 6402901-6403971,6404581-6404826 27 3.9
10_06_0119 - 10956190-10956754,10956984-10957139,10958402-10958622 27 3.9
08_02_0080 + 12024505-12024942 27 3.9
11_06_0008 - 19181933-19182009,19185148-19185691 27 6.9
01_06_0019 + 25620966-25621580 27 6.9
02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230 26 9.1
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 103 bits (248), Expect = 4e-23
Identities = 45/85 (52%), Positives = 58/85 (68%)
Frame = +2
Query: 29 FHPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERA 208
F+P KEHG P DENRH GDLGN + + +++ D + +TGAH I+GRAVV+H
Sbjct: 63 FNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADP 122
Query: 209 DDFGRTDHPDSRKTGNAGGRVACGV 283
DD G+ H S+ TGNAGGRVACG+
Sbjct: 123 DDLGKGGHELSKTTGNAGGRVACGI 147
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 98.3 bits (234), Expect = 2e-21
Identities = 42/85 (49%), Positives = 57/85 (67%)
Frame = +2
Query: 29 FHPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERA 208
++P KEHG P DE RH GDLGN ++ + I ++D + +TG + I+GRAVV+H
Sbjct: 181 YNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADP 240
Query: 209 DDFGRTDHPDSRKTGNAGGRVACGV 283
DD G+ H S+ TGNAGGRVACG+
Sbjct: 241 DDLGKGGHELSKTTGNAGGRVACGI 265
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 89.0 bits (211), Expect = 1e-18
Identities = 39/85 (45%), Positives = 54/85 (63%)
Frame = +2
Query: 29 FHPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERA 208
F+P N HG P DE RH GDLGN + ++ ++D + ++G + ++GRA V+HE
Sbjct: 113 FNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELE 172
Query: 209 DDFGRTDHPDSRKTGNAGGRVACGV 283
DD G+ H S TGNAGGR+ACGV
Sbjct: 173 DDLGKGGHELSLSTGNAGGRLACGV 197
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 76.6 bits (180), Expect = 6e-15
Identities = 34/65 (52%), Positives = 46/65 (70%)
Frame = +2
Query: 29 FHPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHERA 208
F+P NK HG PSD+ RHVGDLGN +K+ + I + D ++++G H ILGRAVV+H +
Sbjct: 73 FNPHNKSHGAPSDDERHVGDLGNIVANKDGVADIFIKDLQISLSGPHSILGRAVVVHADS 132
Query: 209 DDFGR 223
DD GR
Sbjct: 133 DDLGR 137
>12_02_0445 - 19153580-19154269
Length = 229
Score = 29.1 bits (62), Expect = 1.3
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +2
Query: 143 PHLAITGAHGILGR---AVVLHERADDFGRTDHPDSRKTGNAGGRVAC 277
P++A G +GILG AV +H RAD GNAGG V+C
Sbjct: 145 PNVAGGGRNGILGEEIEAVGVHLRADSVHSDASTTDLMAGNAGG-VSC 191
>12_01_0676 +
5765154-5765241,5765329-5765453,5765533-5765604,
5765728-5765802,5765880-5765905,5766709-5766870,
5766963-5767037,5767133-5767204,5767289-5767363,
5767461-5767529,5767839-5767910,5768030-5768161,
5768430-5768920,5769315-5769476,5769570-5769709,
5769818-5770037,5770398-5770633,5771560-5772051
Length = 927
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 99 RNLTRTTPARLI*STRISPLPEHTGFSAGLWFYTSGLMISAALTTQIREKPA 254
+NLT+ L S PLP+ TG S+ + Y L IS + + P+
Sbjct: 249 KNLTKLAEFHLANSNLTGPLPDLTGMSSLSFVYLENLRISGEVPQSLFSLPS 300
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.1 bits (62), Expect = 1.3
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = -3
Query: 309 REMFYSIPMTPQATRPPALPVFLESGWSVRPK------SSARSCRTTALPRIPCAPV 157
R + S+P P+A+ PA PV GW+V P S + + ++A PR AP+
Sbjct: 582 RALRVSVPH-PRASSAPAPPVAAPRGWTVSPTTARYSFSDSGASSSSAAPRASTAPL 637
>07_01_0384 + 2861819-2862169
Length = 116
Score = 29.1 bits (62), Expect = 1.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +1
Query: 253 QRWWTRRLRCHRNTVKHL 306
QRWW RR RC N V L
Sbjct: 42 QRWWQRRWRCGSNVVASL 59
>10_08_1058 + 22608852-22609172,22609257-22610651
Length = 571
Score = 28.7 bits (61), Expect = 1.7
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 180 AGLWFYTSGLMIS--AALTTQIREKPATLVDASPAVSSEYCKTSLYLFI 320
A L FY +GL++ +A +R P T V SPA +++ L L++
Sbjct: 100 ASLLFYLAGLVLLTVSAAVPSLRPAPCTGVPCSPATGTQFSVFFLALYL 148
>08_02_1227 -
25398063-25398302,25398629-25398790,25399019-25399150,
25399909-25399961,25400465-25400942
Length = 354
Score = 28.7 bits (61), Expect = 1.7
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -3
Query: 288 PMTPQATRPPALPVFLESGWSVRPKSSARSCRTTALPRI 172
P +P +PPA FL SGW K R +T PRI
Sbjct: 120 PFSPTQPKPPAS--FLSSGWPDGVKKRGRPKGSTNKPRI 156
>11_01_0763 + 6402901-6403971,6404581-6404826
Length = 438
Score = 27.5 bits (58), Expect = 3.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 232 PRFEKNRQRWWTRRLRC 282
P + + R RWW RR RC
Sbjct: 263 PAWRERRGRWWRRRPRC 279
>10_06_0119 - 10956190-10956754,10956984-10957139,10958402-10958622
Length = 313
Score = 27.5 bits (58), Expect = 3.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 232 PRFEKNRQRWWTRRLRC 282
P + + R RWW RR RC
Sbjct: 252 PAWRERRGRWWRRRPRC 268
>08_02_0080 + 12024505-12024942
Length = 145
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 93 PRSPTWRFSSLGWPCSLFSG*NENRWSHNL 4
P S T + S+GWP S+ NRW +
Sbjct: 39 PVSGTSKILSMGWPISMSKSEMSNRWKSKM 68
>11_06_0008 - 19181933-19182009,19185148-19185691
Length = 206
Score = 26.6 bits (56), Expect = 6.9
Identities = 17/33 (51%), Positives = 17/33 (51%)
Frame = -3
Query: 279 PQATRPPALPVFLESGWSVRPKSSARSCRTTAL 181
PQA PP LPV LE G P SS S T L
Sbjct: 123 PQA--PPLLPVLLELGGLRAPVSSLASLSTRLL 153
>01_06_0019 + 25620966-25621580
Length = 204
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -3
Query: 273 ATRPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVMARC 145
+ RP PV E G R +S+A+SC T + + C
Sbjct: 3 SARPYRFPVPAEGGEPTRRRSAAQSCGTCGASAVASCVALCCC 45
>02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230
Length = 171
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 35 PENKEHGHPSDENRHVGDLGNAE 103
PENK+ G D+N GD +AE
Sbjct: 62 PENKDDGESDDDNDEEGDDEDAE 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,201,999
Number of Sequences: 37544
Number of extensions: 204573
Number of successful extensions: 757
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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