Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C10
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...   130   8e-32
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    26   2.5  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    26   2.5  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   4.4  
SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces pombe|...    25   5.8  
SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ...    25   7.6  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   7.6  

>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score =  130 bits (315), Expect = 8e-32
 Identities = 64/147 (43%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
 Frame = +3

Query: 21  LETANFLLERIS---CQPXXXXXXXXXXXXLAENIKDSVC-IPYEEIPNFPVSTVEGHHG 188
           LE   +++E++     +P            LA  +   V  +PYE+IP+F VS V GH  
Sbjct: 24  LEAREYIIEQVPEELSKPKVAIICGSGLGTLASGLSAPVYEVPYEDIPHFHVSHVPGHAS 83

Query: 189 RLVFGRI--EGVHVVVMQGRFHYYEGYPLWKCCLPVRVMKLLGVHTLIATNAAGGLNSNY 362
           +L F  +  + V  +++ GR+H YEGYP+     PVR+MK++GV  ++ TNAAGGLN  +
Sbjct: 84  KLYFAFLGEKRVPTMILAGRYHSYEGYPIEATTFPVRLMKVMGVEVMVVTNAAGGLNQGF 143

Query: 363 KIGDLMIVKDHINMMGFAGNNPLHGPN 443
           K+GDLMI+KDHIN  G AG NPL GPN
Sbjct: 144 KVGDLMILKDHINFPGLAGMNPLRGPN 170


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 175 STVLTGKLGISSYGMHTESFMFSAREPIPEP 83
           +T   GKL  SS    T + +FS  +PIP+P
Sbjct: 12  NTSFVGKLSSSSNVDPTLNLLFSQSKPIPKP 42


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 293 PNRETALPKWVTFVIVESALHDDYVYSFYTPEDQSSVVSFYSA 165
           P  + +L +W  F    +  H+ +VYS    +D++SVV+   A
Sbjct: 202 PVNQASLDRWY-FPPFSATYHNGHVYSRGAADDKNSVVAILEA 243


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 443 VGTMQRVVASEAHHINMVLNNHQVSN 366
           +G     VA  A+H   VL +H VSN
Sbjct: 44  IGEDASFVAQNAYHTTSVLKHHNVSN 69


>SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 211 SIRPKTSLPWCPS 173
           S+ P+T  PWCP+
Sbjct: 29  SVDPRTKQPWCPT 41


>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
           Orc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 264

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +3

Query: 138 YEEIPNFPVSTVEGHHGRLVFGRIEGVHVVVMQGRFHYYEGYPLWKCCLPVRV 296
           Y+EIP   +   E    R+      G+  ++        + YP+WK C+  R+
Sbjct: 200 YKEIPLNGIEGYESQKQRIK--PWSGIASMIQIDYEKRLQNYPIWKACIEERI 250


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 175 STVLTGKLGISSYGMHTESFMFSARE 98
           STV++GK  ISS+G   +    +++E
Sbjct: 604 STVISGKESISSFGAKVDDLKSTSKE 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,668
Number of Sequences: 5004
Number of extensions: 43264
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)