Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C10
         (469 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0008 + 63393-64004                                               30   1.1  
11_01_0009 + 67344-67955                                               30   1.1  
05_06_0134 + 25912474-25912561,25912678-25913230,25914063-259145...    29   2.5  
08_02_0862 + 21979932-21980057,21982221-21982289,21982394-21982603     28   3.3  
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078...    27   7.5  
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278...    27   7.5  
01_06_0357 - 28668894-28669238,28669510-28669537,28669578-286696...    27   7.5  

>12_01_0008 + 63393-64004
          Length = 203

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 108 ENIKDSVCIPYEEIPNFPVSTVEGHHGRLVFGRIEGVHVVVMQGRFHYYEGYP 266
           + ++  +C  +++ P+ P STV         G +  VH  VMQ   H++  +P
Sbjct: 66  QRLRRRLCARHQQQPSPPSSTVPPAPTAAAAGAVVQVHPAVMQLHHHHHHHHP 118


>11_01_0009 + 67344-67955
          Length = 203

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 108 ENIKDSVCIPYEEIPNFPVSTVEGHHGRLVFGRIEGVHVVVMQGRFHYYEGYP 266
           + ++  +C  +++ P+ P STV         G +  VH  VMQ   H++  +P
Sbjct: 66  QRLRRRLCARHQQQPSPPSSTVPPAPTAAAAGAVVQVHPAVMQLHHHHHHHHP 118


>05_06_0134 + 25912474-25912561,25912678-25913230,25914063-25914556,
            25914804-25914942,25915511-25915582,25915671-25915742,
            25917202-25917282,25917385-25917545,25917626-25917894,
            25917996-25918122,25918193-25918261,25918366-25918558,
            25918605-25919046
          Length = 919

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
 Frame = +3

Query: 159  PVSTVEGHHGRLVFGRIEGVHVVVMQGRFHYYEGYPLWKCC-LPVRVMKLLGVHTLIATN 335
            P+S +     RL  G IEGV    M G    Y+   LWK   + ++   L   H    T+
Sbjct: 824  PISIIHWAQQRLARGNIEGVVNASMHGD---YDVNGLWKVADIALKCTALSSAHRPTMTD 880

Query: 336  AAGGLNSNYKIGDLMIVKDHINMMGFAGNN 425
                L    ++ D   V D IN   + GN+
Sbjct: 881  VVAQLQECLELEDKHQVSD-INNGFYNGNS 909


>08_02_0862 + 21979932-21980057,21982221-21982289,21982394-21982603
          Length = 134

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 404 HINMVLNNHQVSNLIV*I-QSTGRVRCNQCMYSEKFHHPNRET 279
           H  M+ + +QVS+    + + T  V C+ C  S+ F+H +R+T
Sbjct: 56  HNRMIPSRYQVSDDFNHVSRDTHEVSCDICHVSDDFYHVSRDT 98



 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 350 QSTGRVRCNQCMYSEKFHHPNRET 279
           + T  V C+ C  S+ F+H +R+T
Sbjct: 96  RDTREVSCDTCQVSDDFYHVSRDT 119


>09_04_0630 +
           19104678-19105463,19106169-19106348,19107775-19107864,
           19108777-19108958,19109968-19109974,19111763-19111833,
           19112188-19112224,19112433-19112603
          Length = 507

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 353 IQSTGRVRCNQCMYSEKFHHPNRET 279
           ++ T  V C+ C  S+ F+H +R+T
Sbjct: 271 LRDTREVSCDTCKVSDDFYHVSRDT 295


>05_01_0356 +
           2785410-2785670,2785843-2785960,2786800-2786891,
           2787114-2787176,2787299-2787397,2787726-2787884,
           2788420-2788491,2788567-2788699,2788813-2788877,
           2789016-2789091,2789236-2789337,2789524-2789716,
           2790576-2790654,2792939-2793007,2793261-2793311,
           2793680-2793742,2793926-2794041,2794263-2794347,
           2794898-2794957,2795594-2795639,2796011-2796084,
           2796350-2796400,2796474-2796674,2796747-2796791,
           2797063-2797156,2797226-2797371,2797510-2797739,
           2798136-2798196,2798290-2798347,2799020-2799513
          Length = 1151

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 208 IRPKTSLPWCPSTVLTGKLGISSYGMHTESFMFSAREPIPEPHMMPML 65
           I P +S+PW  +  L   +G  + G+ +E+ M   R P P P   P++
Sbjct: 29  IPPASSMPWVRN--LRRFVGTGA-GLGSEALMGQCRSPPPHPFSFPVV 73


>01_06_0357 -
           28668894-28669238,28669510-28669537,28669578-28669635,
           28669836-28669916,28670395-28670526,28670609-28670926,
           28672495-28673317
          Length = 594

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 129 CIPYEEIPNFPVSTVEGHHGRLVFGRIEGVHVVVMQG 239
           C   E  P+ PV  +E   GRL+ G   G+ V  +QG
Sbjct: 185 CAVVELEPSRPVYAMEVAMGRLLLGEAGGLRVFPLQG 221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,099,533
Number of Sequences: 37544
Number of extensions: 297447
Number of successful extensions: 752
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)