Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C08
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    29   0.19 
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    28   0.44 
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    28   0.59 
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    27   1.4  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   2.4  
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    26   2.4  
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    26   2.4  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   4.1  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   4.1  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   5.5  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    24   9.5  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    24   9.5  

>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 29.5 bits (63), Expect = 0.19
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 116 LKLWKLFPVHYNYRVFNKYYLGEHLK 39
           L+ + LF  HY+YR    +YL +H+K
Sbjct: 233 LRAFSLFAHHYSYRCNTWFYLSKHMK 258


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 28.3 bits (60), Expect = 0.44
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 159 SARNAQGKKIFNISSNTYLFNRNNRVAIIVLNCLNRNVTSLKFHNTYKYFILLQH 323
           +A N  G+K F+I S + + N N   A + L+ L    T    +   +Y+++ +H
Sbjct: 115 NATNGVGEKGFDILSFSNVKNHNRFYAHVFLSWLFFGFTIFIIYRELRYYVIFRH 169


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 191 KYFFPLSISCRVCMWTMISFRISFWLKL 108
           +YF   S+ C++ +W+++  +I  W +L
Sbjct: 309 RYFVSGSLDCKIQLWSILRHKILHWTEL 336


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -2

Query: 191 KYFFPLSISCRVCMWTMISFRISFWLKLWKL 99
           ++F   S+ C++ +W++    +SFW +L +L
Sbjct: 363 RFFLSGSLDCKLRLWSIKEKAVSFWNELPEL 393


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 210 YLFNRNNRVAIIVLNCLNRNVTSLKF 287
           YLF R N ++  VL C++   TS+ F
Sbjct: 91  YLFQRYNFISARVLRCVDGTSTSIAF 116


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 158 VCMWTMISFRISFWLKLWKLFPVHYNYRVFNKYYLGEHLK 39
           VCM +  +     W +L   F + Y+ R F  +Y+GE ++
Sbjct: 379 VCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGME 418


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 158 VCMWTMISFRISFWLKLWKLFPVHYNYRVFNKYYLGEHLK 39
           VCM +  +     W +L   F + Y+ R F  +Y+GE ++
Sbjct: 375 VCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGME 414


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = -3

Query: 235 TRLFRLNKYVLELILNIFF 179
           T+L+RLN  +L ++++I+F
Sbjct: 696 TKLYRLNSILLTVVMDIYF 714


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -2

Query: 242  YCDPIISVK*ICVGAYIKYFFPLSISCRVCMWTMISF 132
            +C+P+      CV   ++ +   ++ C  C+W + SF
Sbjct: 1113 FCEPLE-----CVETLVQIYLENNVECCQCIWDIFSF 1144


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -3

Query: 214 KYVLELILN---IFFP*AFLAEYVCGQ*LVLGLASG*SCGNYFRYTTITVFLTN 62
           KYV   +LN    FF  A    Y C   LVL  AS   C NY     I ++++N
Sbjct: 573 KYVYSQVLNKLIYFFTIAIC--YACINPLVLLFASVLFCVNYLTQKYILMYVSN 624


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 342 CHSFTDSVARV*NIYMYYGILNL 274
           C S TD+V RV   Y Y+ + NL
Sbjct: 22  CSSVTDNVHRVNYCYNYHTVPNL 44


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +3

Query: 147 PHTYSARNAQGKKIFNISSNTYLFNRNNRVAIIVLNCLNRNVTSLKFHNTYK 302
           PH   A   QG+K+  ISS   L     R   +    LNR + SL +   YK
Sbjct: 245 PHAQRAPQMQGEKLLEISSMDILC----RKTFLSYQTLNR-IQSLVYPIAYK 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,563,102
Number of Sequences: 5004
Number of extensions: 30814
Number of successful extensions: 81
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)