Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C08
         (390 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0012 - 11791524-11791957,11792014-11792108,11792163-117922...    29   1.7  
06_03_0128 + 16991750-16991841,16991885-16991951,16992530-169926...    28   2.3  
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619...    27   5.3  
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348...    27   7.0  
11_04_0235 - 15209003-15211187,15212242-15212319,15212743-15213527     26   9.2  

>10_07_0012 -
           11791524-11791957,11792014-11792108,11792163-11792226,
           11792327-11792591,11792670-11793127,11793271-11793592
          Length = 545

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 213 LFNRNNRVAIIVLNCLNRNVTSLKFHNTYKYFI 311
           L+ R++R+   +L C+N+  T  +F N + +FI
Sbjct: 144 LYARDDRIESELLLCVNQTYTPQEFENAWSWFI 176


>06_03_0128 +
           16991750-16991841,16991885-16991951,16992530-16992627,
           16993269-16993563
          Length = 183

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 213 LFNRNNRVAIIVLNCLNRNVTSLKFHNTYKYFI 311
           +F R+  +   ++ C+N+  T ++F N +K FI
Sbjct: 100 IFMRHKDIETEMMVCINQTYTPMEFENAWKQFI 132


>02_02_0028 +
           6196453-6196512,6196936-6197320,6197843-6197925,
           6198060-6198183,6198404-6198523,6198595-6198755,
           6198999-6199157,6199272-6199434,6199604-6199729,
           6199775-6199900,6200400-6200764,6201204-6201404,
           6201685-6201794,6201919-6202003,6202553-6202681,
           6202763-6202868,6202984-6203072,6203172-6203474
          Length = 964

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 313 SMKYLYVLWNFKLVTLRFKQFKTIIATRLFRLNKYVLELI 194
           ++ Y Y      L  + F  F +++  R FRLN Y ++ +
Sbjct: 394 TISYCYFFLLSLLYVMSFTLFGSVLGLRFFRLNDYSVQFV 433


>06_02_0345 +
           14833838-14833997,14834095-14834552,14834633-14834870,
           14834974-14835431,14836554-14836955
          Length = 571

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 213 LFNRNNRVAIIVLNCLNRNVTSLKFHNTYKYFI 311
           +F R+  + I ++ C+N+    ++F N +K FI
Sbjct: 90  IFMRHKDIEIEMMVCINQAYMPMEFENAWKEFI 122


>11_04_0235 - 15209003-15211187,15212242-15212319,15212743-15213527
          Length = 1015

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 381 ESEKEIERFKHVWCHSFTDSVARV*N-IYMYYGI 283
           E E  +ER KHV  H++T     V     +Y+GI
Sbjct: 412 EREDTLERMKHVLVHNYTSLPGHVIKACLLYFGI 445


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,699,036
Number of Sequences: 37544
Number of extensions: 152877
Number of successful extensions: 283
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)