Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C08
         (390 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42284| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_42282| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_20887| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  
SB_35258| Best HMM Match : LEA_4 (HMM E-Value=1.8)                     26   9.5  

>SB_42284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 203 GAYIKYFFPLSISCRVCMWTMISFRISF 120
           G Y+K+ FP++ S  V  W ++ +R ++
Sbjct: 89  GDYVKFGFPMASSATVLAWGLVEYRDAY 116


>SB_42282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 572

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 203 GAYIKYFFPLSISCRVCMWTMISFRISF 120
           G Y+K+ FP++ S  V  W ++ +R ++
Sbjct: 206 GDYVKFGFPMASSATVLAWGLVEYRDAY 233


>SB_20887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 104 KLFPVHYNYRVFNKYYLGEHLKIK 33
           K + VHY +    KYY+G  L +K
Sbjct: 233 KYYAVHYQFNSTCKYYIGRVLSMK 256


>SB_35258| Best HMM Match : LEA_4 (HMM E-Value=1.8)
          Length = 291

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/68 (22%), Positives = 22/68 (32%)
 Frame = +3

Query: 120 EANPKTNHCPHTYSARNAQGKKIFNISSNTYLFNRNNRVAIIVLNCLNRNVTSLKFHNTY 299
           + N +T  C   +  R        N  +  Y   RN R  +     + R    +  HNT 
Sbjct: 126 QRNTRTTVCKAQHITRTTVYMAQHNTRTTVYKAQRNTRTTVYKAQHITRTTVYMSQHNTR 185

Query: 300 KYFILLQH 323
                 QH
Sbjct: 186 TRVYKAQH 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,951,099
Number of Sequences: 59808
Number of extensions: 214936
Number of successful extensions: 441
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)