Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C08
         (390 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016443-10|AAC24276.4|  325|Caenorhabditis elegans Serpentine r...    29   1.2  
AC084197-6|AAO38572.1|  328|Caenorhabditis elegans Serpentine re...    28   2.7  
U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine rec...    27   4.7  
Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AC084197-1|AAG23478.1|  328|Caenorhabditis elegans Serpentine re...    27   6.2  
U56963-12|AAB38128.1|  341|Caenorhabditis elegans Serpentine rec...    26   8.2  

>AF016443-10|AAC24276.4|  325|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 9 protein.
          Length = 325

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -2

Query: 143 MISF-RISFW-LKLWKLFPVHYNYRVFNKYYLGEHL 42
           ++SF  ISFW L +     +H N+R+ N +Y G++L
Sbjct: 31  IVSFLSISFWFLVILTAKNMHPNFRIINAFYYGQYL 66


>AC084197-6|AAO38572.1|  328|Caenorhabditis elegans Serpentine
           receptor, class v protein25 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 234 VAIIVLNCLNRNVTSLKFHNTYKYFILLQHC 326
           +  +V  CL R     K +NT  Y +LLQHC
Sbjct: 27  IYFLVFTCLFRLRCISKTYNTTFYTLLLQHC 57


>U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine
           receptor, class v protein32 protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 240 IIVLNCLNRNVTSLKFHNTYKYFILLQHC 326
           I+V  CL R       +NT  Y ILLQHC
Sbjct: 27  ILVFACLLRLRCVSNTYNTTFYSILLQHC 55


>Z77652-7|CAB01119.1|  341|Caenorhabditis elegans Hypothetical
           protein C06B3.10 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -2

Query: 206 VGAYIKYFFPLSISCRVCMWTMISFRISFWLKLWKLFPVHYNYRVFNKYYLGEH 45
           +G+Y    +   I   +  + +I   + FW+  + L       + FNKYY G H
Sbjct: 115 IGSYYIKNYDRQIIITLMTFPVIFGLVWFWMTHFTLTASDETEQFFNKYYYGVH 168


>AC084197-1|AAG23478.1|  328|Caenorhabditis elegans Serpentine
           receptor, class v protein24 protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 243 IVLNCLNRNVTSLKFHNTYKYFILLQHC 326
           +V  CL R     + +NT  Y ILLQHC
Sbjct: 17  MVFGCLLRLRCVSRSYNTTFYSILLQHC 44


>U56963-12|AAB38128.1|  341|Caenorhabditis elegans Serpentine
           receptor, class v protein33 protein.
          Length = 341

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 240 IIVLNCLNRNVTSLKFHNTYKYFILLQHC 326
           ++V  CL R     K +N+  Y ILLQHC
Sbjct: 31  LVVFVCLLRLRYVSKTYNSTFYSILLQHC 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,488,173
Number of Sequences: 27780
Number of extensions: 169208
Number of successful extensions: 369
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)