Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_C07
(483 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_58205| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21) 27 6.1
SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31) 27 8.1
SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23) 27 8.1
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011) 27 8.1
SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1778
Score = 31.1 bits (67), Expect = 0.50
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Frame = +3
Query: 102 EDQPEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAA 281
+++P V+ + T+N + +K + GN + L A S N K G
Sbjct: 651 DNEPVTETIDSVKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDK 707
Query: 282 TAGLAY-DNVNGHGATLT-KTHIPGFGDKMTAAGKVN 386
++Y DN+N A T + IPG K + KVN
Sbjct: 708 DVVISYSDNMNNSKAANTDQFGIPGSDSKTGSDSKVN 744
>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 351 FGDKMTAAGKVNLFH---NDNHDFSAKAFATRNLPNIPQVPNFNTV 479
FGDK A + FH ND D S + TR + ++ +P + TV
Sbjct: 587 FGDKWIGANTIRAFHHTDNDGIDASENSNLTRIIFDLSTLPMYETV 632
>SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +1
Query: 43 SASTAGTCSLKSLVTTLNNMRISRSSGPTPGCAGKRVH*LSTQTAPQVLWSRYL*LETKI 222
SA+TA S+ + TL +S ++GPTP + ++ L+ + + L + + +
Sbjct: 113 SATTAQDSSVLDTLATLATATLSHNTGPTPSTSMQQATSLAGRISVTPLTLSQNTISSSL 172
Query: 223 TG-SVPLAP 246
+G S PL P
Sbjct: 173 SGLSTPLTP 181
>SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 61 TCSLKSLVTTLNNMRISRSSGPTPGC 138
T + K+++TTL MRI ++GP C
Sbjct: 654 TTTKKTIITTLTTMRICAANGPLIDC 679
>SB_58205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +2
Query: 134 GAPASGCTNCQLRRHLRCYGQGTYNWKRKS 223
G PA N QL R RC TY W RKS
Sbjct: 73 GKPAYFAKNLQLDRK-RCLYPKTYTWDRKS 101
>SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
Length = 1336
Score = 27.5 bits (58), Expect = 6.1
Identities = 22/87 (25%), Positives = 37/87 (42%)
Frame = +3
Query: 54 SRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLS 233
+R + EP ++ EDQ E A+S +R +AG +D G + + T N NH
Sbjct: 1183 ARKAQINEPPSPLKVQEDQRETEAHSPIRTRAGREATCNDHLKGCVNQA--TCN-NHLKG 1239
Query: 234 ALGSVDLTNQMKLGAATAGLAYDNVNG 314
+ + +K G D++ G
Sbjct: 1240 CVNQATCNDHLK-GCVNQATCNDHLKG 1265
>SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31)
Length = 624
Score = 27.1 bits (57), Expect = 8.1
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Frame = +3
Query: 72 EEPGYYIEQYE--DQPEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGS 245
E Y E+YE D AN QA + N+ ++G ++ + ++G + ++ A S
Sbjct: 113 ERSEYGGERYETSDFQRSVANRYKELQADSWKKNNVTSAGGLLSLDLSGEGHFKVHANAS 172
Query: 246 VDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGF 353
+ + Y + A L HIPGF
Sbjct: 173 TAIPAAETTDWPQENI-YSTIQYQEAPLPPAHIPGF 207
>SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)
Length = 1592
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 155 TNCQLRRHL-RCYGQGTYNWKRKSQAQCPWLRRS 253
TN Q L R Y YNW+ + + PWL ++
Sbjct: 1207 TNIQTNVSLVRKYNSWEYNWRNSLEKRMPWLGKT 1240
>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
Length = 1745
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +1
Query: 25 SYQFFWSASTAGTCSLKSLVTTLNNMRISRSSGPTPGCAGKRVH*LSTQTAPQVLWSRYL 204
S+ FW +S+ + S S+ +L+++R S G + LS T P W+R++
Sbjct: 376 SHSGFWFSSSRFSRSSSSISDSLSSLRSRASWRRLTDVLGSSMVSLSVATTPCSSWARFV 435
>SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +3
Query: 255 TNQMKLGAATAGLAYDNVNGHGAT--LTKTHIPGFGDKMTAAGKVNLFHNDNHDFSAKA 425
TNQ L Y+ +N A L + +P G+K +G+ N+ D DFS A
Sbjct: 59 TNQTLLHVVVLDTQYERMNSTYACALLANSRLPCVGEKDCESGEGNISSIDMKDFSNAA 117
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,602,533
Number of Sequences: 59808
Number of extensions: 321691
Number of successful extensions: 812
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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