Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C06
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.07 |tom20||mitochondrial TOM complex subunit Tom20|Schi...    47   2e-06
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    29   0.38 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   1.2  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   2.7  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    25   4.7  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           25   6.2  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    25   8.2  

>SPAC6F12.07 |tom20||mitochondrial TOM complex subunit
           Tom20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 17/130 (13%)
 Frame = +2

Query: 98  IAGTLFLGYCVYFDQQRRKDPLFKKKLRERRQNAHQNTSRSRTLSGPLPDMSDHEAMQ-- 271
           +  T  +GY +YFD +RR DP F+K L+ R +  H+   +   L+    D++  EA+Q  
Sbjct: 10  LLATAAVGYAIYFDYKRRNDPHFRKTLKRRYKKVHEAKKQEEKLATKKFDITVEEALQVV 69

Query: 272 -------------RFFLQQIQLGEELLAS--GDLEAGVEHLGQAVAVCGXXXXXXXXXXX 406
                         FF+QQ+  GE+L      +++        A+ V             
Sbjct: 70  ASTPVPSSAEEKELFFMQQVARGEQLFQQQPDNIKESAACFYSALKVYPQPVELFAIYER 129

Query: 407 XMPAPIFHLL 436
            +P PI +LL
Sbjct: 130 TVPEPIMNLL 139


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 29.1 bits (62), Expect = 0.38
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 2   QEIIVIIACLQSFESEIKMMEITRTTLGIAVGIAGTLFLGYCVYFD 139
           Q+IIV+I    ++E    + E   T  G+ + +AGT  L    Y D
Sbjct: 503 QDIIVVIVGGATYEEAHFVSEFNATQPGVRIILAGTTILNSTAYID 548


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 80  LGIAVGIAGTLFLGYCVYF-DQQRRKDP 160
           LG+ +G+  ++F GYC  F D++  K P
Sbjct: 319 LGLIMGVFNSVFAGYCTIFCDEEVLKTP 346


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +2

Query: 143 QRRKDPLFKKKLRERRQNAHQNTSRSRTLSGPLPDMSDHEAMQ 271
           +R   P FK K  E      +NT  S     P+P+ S    +Q
Sbjct: 208 ERDSSPSFKSKRSESSTRKIRNTRSSAQQESPIPETSAQSPVQ 250


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 238 WSTQCTRSRSILVSILSTLSQLLFEQGILTSLL 140
           WS       S+L+  +  L ++LFE  I  SLL
Sbjct: 283 WSWPSQNCNSVLLKDIYKLQEILFEMDIWNSLL 315


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +3

Query: 255 IMRLCK--DSSCNRFSLVKSYW 314
           + ++CK  + SC RF+  K YW
Sbjct: 85  VQKVCKKLNISCRRFNFEKEYW 106


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 400 PTNNASADLPSSLEEASRSLG 462
           P NN SA  PSSL+ ++  +G
Sbjct: 537 PQNNISAPTPSSLQSSNAPVG 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,915,118
Number of Sequences: 5004
Number of extensions: 36194
Number of successful extensions: 229
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)