Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C06
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1004 + 8500584-8501881,8502194-8502402,8503024-8503266,850...    30   1.2  
11_06_0135 - 20470247-20470906                                         28   3.5  
11_01_0304 + 2280461-2281192                                           28   3.5  
01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964...    27   6.2  
09_04_0363 + 16957949-16958361,16958524-16958527                       27   8.2  
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352...    27   8.2  
02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688     27   8.2  
02_03_0332 + 17834876-17834887,17835013-17835972                       27   8.2  

>07_01_1004 +
           8500584-8501881,8502194-8502402,8503024-8503266,
           8503381-8503697,8503891-8504250
          Length = 808

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 218 SRTLSGPLPDMSDHEAMQRFFLQQIQLGEELLASGDLEAGVEHL 349
           + TL G +P  ++   ++  FL   +L   L  +GDL  G+E L
Sbjct: 133 NNTLQGTIPSFANCSELRALFLDGNELAGGLPGAGDLPVGIEAL 176


>11_06_0135 - 20470247-20470906
          Length = 219

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +2

Query: 296 LGEELLASGDLEAGVEHLGQAVAVCGXXXXXXXXXXXXMPAPIFHLLLKKLPEVSERLRA 475
           L + LLA+   + G + L + +A C             +PA I    +++ P+V   LR 
Sbjct: 105 LADPLLAAAAAKKGGDELPKCLASCAASLDDVSKAMSGLPADID---VERYPKVQSFLRN 161

Query: 476 SIESG 490
             ESG
Sbjct: 162 KFESG 166


>11_01_0304 + 2280461-2281192
          Length = 243

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 58  DGDNTYYIRDCCWYRRYSVFRIL 126
           DG N++Y+RD   YRRY   R+L
Sbjct: 24  DGYNSHYVRDDDPYRRYRELRML 46


>01_07_0383 -
           43195095-43195322,43195408-43195638,43196134-43196454,
           43196512-43196589,43196664-43197727,43197813-43198503,
           43198743-43199541,43200010-43200158,43200159-43200286,
           43200389-43200494,43200835-43200843,43201332-43201821,
           43201896-43202554,43203759-43203851,43204044-43204196,
           43205092-43205194,43205376-43205467,43206229-43206306,
           43206987-43207049,43207339-43207512
          Length = 1902

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 185 RRQNAHQNTSRSRTLSGPLPDMSDHEAMQRFFLQQIQLGEELLAS 319
           R  ++ +NTS S+ LSG L       +M ++FL  ++    ++ S
Sbjct: 278 RDNSSSENTSLSKVLSGTLSSAESAFSMNKYFLDFLKSKSAIIRS 322


>09_04_0363 + 16957949-16958361,16958524-16958527
          Length = 138

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -1

Query: 198 AFCLRSRNFFLNKGSLRRCWSKYTQYPKNRVPAIPTA-IPNVV 73
           A C  S  FF +K +   C   Y  + K   PA  TA  PN++
Sbjct: 61  ALCASSCGFFSSKETKNMCSKCYRDHLKATSPATATASTPNII 103


>07_01_0467 -
           3524598-3524837,3524939-3525466,3526242-3526892,
           3527015-3527500,3527580-3527792,3527885-3528174,
           3528276-3528418,3528633-3528855,3528983-3529160,
           3529598-3529867
          Length = 1073

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 92  VGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERRQNAHQNT 211
           +GI   L    CV  ++  +K  + KK+ R+ +Q AH +T
Sbjct: 751 LGIPTDLRTPVCVTEEKTNKKSSVSKKQKRKNKQAAHSDT 790


>02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688
          Length = 761

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 71  RTTLGIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERRQN 196
           +   G++VG+   L + +C+Y   Q+RK  L + K R   QN
Sbjct: 365 KVVTGVSVGVFLPLLMYFCLYLVLQKRK--LIRTKQRFFEQN 404


>02_03_0332 + 17834876-17834887,17835013-17835972
          Length = 323

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 445 LLQEKMEDR-RWHCLLEHAKQLLCLTTD 365
           +L  K  D+ RWH L+   K ++CL  D
Sbjct: 256 MLSVKSSDKSRWHSLITEVKGMMCLLQD 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,411,325
Number of Sequences: 37544
Number of extensions: 238605
Number of successful extensions: 643
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)