Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C06
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74472-2|CAA98945.1|  188|Caenorhabditis elegans Hypothetical pr...   104   3e-23
U23524-1|AAC46822.1|  268|Caenorhabditis elegans Hypothetical pr...    27   5.6  
Z68297-5|CAC70081.1|  394|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AL132876-27|CAD21658.1|  906|Caenorhabditis elegans Hypothetical...    27   9.8  
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    27   9.8  
AL110487-6|CAB54433.2|  472|Caenorhabditis elegans Hypothetical ...    27   9.8  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    27   9.8  

>Z74472-2|CAA98945.1|  188|Caenorhabditis elegans Hypothetical
           protein F23H12.2 protein.
          Length = 188

 Score =  104 bits (250), Expect = 3e-23
 Identities = 52/143 (36%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
 Frame = +2

Query: 56  MMEITRTTLGIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERRQ---NAHQNTSRSRT 226
           ++   ++ + +A GIAG  FLGYC+YFD +R   P +K K+R++R+    A     R   
Sbjct: 5   ILGFNKSNVVLAAGIAGAAFLGYCIYFDHKRINAPDYKDKIRQKRRAQAGAGGMAPRRPA 64

Query: 227 LSG--PLPDMSDHEAMQRFFLQQIQLGEELLASGDLEAGVEHLGQAVAVCGXXXXXXXXX 400
            +G    PD++D   MQRFFLQ++QLGEEL+A+G+++ G  H+  AV +CG         
Sbjct: 65  AAGNDAAPDVTDPSQMQRFFLQEVQLGEELMAAGNVDEGAVHIANAVMLCGESQQLLSIF 124

Query: 401 XXXMPAPIFHLLLKKLPEVSERL 469
              +    F  ++++LP   ERL
Sbjct: 125 QQTLSEDQFRAVVQQLPSTRERL 147


>U23524-1|AAC46822.1|  268|Caenorhabditis elegans Hypothetical
           protein C29F5.3 protein.
          Length = 268

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 308 TLHQAESVARRIFA*PHDHSYQVVVHSVYEI 216
           T  + ES+ +R+FA PH+  Y +V +S  ++
Sbjct: 92  TSQRTESLRQRLFALPHEPDYNLVKNSKRQV 122


>Z68297-5|CAC70081.1|  394|Caenorhabditis elegans Hypothetical
           protein F11A10.7 protein.
          Length = 394

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 142 LVKVYTIS*KQSTGDTNSNP*CSTCYLHHFNFTFKRLQTRNNND 11
           L K+ T   + S G  N N    T  LH F F+ K+ +T   ND
Sbjct: 328 LTKIQTAKKRTSHGKKNQNE--ITGKLHKFKFSTKKERTTEQND 369


>AL132876-27|CAD21658.1|  906|Caenorhabditis elegans Hypothetical
           protein Y105E8A.7a protein.
          Length = 906

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 77  TLGIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERRQNAHQNTSRSR 223
           T+ IA    G  F+  C++F        LFKKKL  ++++  +N ++ R
Sbjct: 809 TVVIAAVFCGITFVLICIFFLY------LFKKKLERKKKSKRKNDTKHR 851


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +2

Query: 137 DQQRRKDPLFKKKLRERRQNAHQNTSRSRTLSGPLPDMSDHEAMQR 274
           D+ R+KD   KKK R R ++  + +SRSR+ S   P   D E  +R
Sbjct: 73  DRDRKKDR--KKKDRSRERDRERRSSRSRSRS---PRDRDRERRRR 113


>AL110487-6|CAB54433.2|  472|Caenorhabditis elegans Hypothetical
           protein Y39E4B.7 protein.
          Length = 472

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 158 PLFKKKLRE-RRQNAHQNTSRSRTLSGPLPDMSDHEAMQRFFLQQIQLGEELLASGDLEA 334
           P FK  + E R+Q   +    +  ++GP+ + + H   +R     + + ++  A G + A
Sbjct: 254 PTFKSHVMEFRKQRKEEQARLANRINGPVEEQNAHADDERDETSVLYVPDQKRADGKMVA 313

Query: 335 GVE 343
            VE
Sbjct: 314 VVE 316


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +2

Query: 137 DQQRRKDPLFKKKLRERRQNAHQNTSRSRTLSGPLPDMSDHEAMQR 274
           D+ R+KD   KKK R R ++  + +SRSR+ S   P   D E  +R
Sbjct: 73  DRDRKKDR--KKKDRSRERDRERRSSRSRSRS---PRDRDRERRRR 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,649,731
Number of Sequences: 27780
Number of extensions: 205905
Number of successful extensions: 609
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)