Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_C04
(394 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0470 - 10700092-10700505 138 2e-33
10_08_0951 - 21769342-21769752 137 3e-33
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 31 0.25
10_08_0922 - 21593030-21593225,21593319-21594142 29 1.8
07_03_0715 + 20889399-20890111,20890950-20891060,20891128-208913... 29 1.8
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 29 1.8
03_06_0508 + 34417540-34417649,34418239-34418338,34418445-344184... 28 2.3
01_06_1613 + 38643833-38643974,38644054-38644190,38644828-386452... 28 2.3
08_02_1498 + 27553449-27553730,27553834-27553946,27554063-275541... 28 3.1
02_05_0587 + 30162806-30163183,30163315-30163478,30163571-301636... 27 4.1
01_01_0469 - 3456067-3456123,3456414-3456565,3456649-3456779,345... 27 5.4
12_02_0856 + 23708234-23708420,23709364-23709567,23709689-237099... 27 7.1
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 27 7.1
03_06_0285 + 32848085-32848988,32849057-32849245,32850136-328503... 27 7.1
09_03_0139 + 12692844-12694982 26 9.4
06_03_0449 + 20907491-20910146,20910313-20910782 26 9.4
>02_02_0470 - 10700092-10700505
Length = 137
Score = 138 bits (333), Expect = 2e-33
Identities = 61/132 (46%), Positives = 91/132 (68%), Gaps = 3/132 (2%)
Frame = +3
Query: 6 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 185
M K +KPGK V++L GRYAGRKA++V+ ++EGT D+PYGH VAG+ +YP+KV ++
Sbjct: 1 MVKFLKPGKAVILLQGRYAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 60
Query: 186 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSA---QDLKDPAKRTKLRFNTRVRFE 356
K K+S++K F+K VN+ H+MPTRY++D F+ ++ L K+ + R E
Sbjct: 61 KTAKKSRVKCFLKLVNFTHIMPTRYTLDVDFKDVASGGPDALATRDKKVAACKAAKARLE 120
Query: 357 ERYKSGKNKWFF 392
ER+K+GKN+WFF
Sbjct: 121 ERFKTGKNRWFF 132
>10_08_0951 - 21769342-21769752
Length = 136
Score = 137 bits (332), Expect = 3e-33
Identities = 60/131 (45%), Positives = 92/131 (70%), Gaps = 2/131 (1%)
Frame = +3
Query: 6 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 185
M K +KPGK V++L GR+AGRKA++V+ ++EGT D+PYGH VAG+ +YP+KV ++
Sbjct: 1 MVKFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 60
Query: 186 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSA--QDLKDPAKRTKLRFNTRVRFEE 359
K K+S++K F+K VN+ HLMPTRY++D ++ +A L K+ + + R E+
Sbjct: 61 KTAKKSRVKCFLKLVNFTHLMPTRYTLDVDLKEVAAGPDALATRDKKVAACKSAKARLED 120
Query: 360 RYKSGKNKWFF 392
R+K+GKN+WFF
Sbjct: 121 RFKTGKNRWFF 131
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 31.5 bits (68), Expect = 0.25
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 3 KMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 101
K+ + PG V+++L+GRY G++ + +K G
Sbjct: 70 KLRSTITPGTVLILLAGRYMGKRVVFLKQLKSG 102
>10_08_0922 - 21593030-21593225,21593319-21594142
Length = 339
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = -3
Query: 221 DERLDFRPLVNFIFSHPFMNLARVSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAED 42
D L F P N + + P LA + V V + +++D+G A V AA+D
Sbjct: 102 DPALRFLPCTNALLAEPVEGLAYFDAHRDEVMEGVSDVYRNVCRVIFDDGVAAAVAAADD 161
>07_03_0715 +
20889399-20890111,20890950-20891060,20891128-20891338,
20891414-20891474,20891719-20891956,20892046-20892196,
20892415-20892703,20893464-20894207,20894720-20894851,
20895728-20895965,20896159-20896246,20896422-20896697
Length = 1083
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 225 GVNYNHLMPTRYSVDFSFEKFSAQDLKDPAKRTKLRFNTRVRFEERYKSG 374
G Y L P + + +K AQ +DP +RT L + TR + E G
Sbjct: 341 GPVYKGLFPD--GQELAIKKLGAQSRQDPIRRTSLNWKTRRKIVEGIAQG 388
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +3
Query: 6 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 101
M + PG V+++L+GR+ G++ + +K G
Sbjct: 94 MRSSITPGTVLILLAGRFMGKRVVFLKQLKSG 125
>03_06_0508 +
34417540-34417649,34418239-34418338,34418445-34418478,
34418559-34418635,34418929-34419005,34419060-34419224,
34419306-34419420,34419546-34419650
Length = 260
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 239 IVVYTFDERLDFRPLVNFIFSH-PFMNLARVSVDAG 135
I+V T++ERL+ +V IF H P +N + VD G
Sbjct: 14 IIVPTYNERLNVALIVYLIFKHLPDVNFEIIVVDDG 49
>01_06_1613 +
38643833-38643974,38644054-38644190,38644828-38645207,
38645487-38645583,38645685-38645972,38646683-38647648
Length = 669
Score = 28.3 bits (60), Expect = 2.3
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 195 KRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSAQDLKDPAKRTKLRFNTRVRFEERYKSG 374
K+ K P +KG+N L T + F K QD+ D K+ K + R + RY G
Sbjct: 529 KKLKPLPGLKGINVESLEKTSGARPFEAPKPMEQDVTDEVKKQKAKKRKR---KPRYPKG 585
>08_02_1498 +
27553449-27553730,27553834-27553946,27554063-27554129,
27554310-27554402,27554516-27554659,27554860-27554954,
27555120-27555412,27555514-27555632,27555742-27556094,
27556177-27556286,27556403-27556512,27556802-27557671
Length = 882
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 45 LSGRYAGRKAIVVKNYDEGTSD-KPYGHAFVAGIDRYPRKVHKRMGKNKI 191
L R AG + ++ + GT D G V G+D R+VH G +
Sbjct: 599 LEHRMAGVYTVTIRGLNTGTLDLTTNGWGHVVGLDGERRRVHSEQGMGAV 648
>02_05_0587 +
30162806-30163183,30163315-30163478,30163571-30163654,
30163737-30163794,30164092-30164145,30164244-30164309,
30164310-30164381,30164547-30164627,30165361-30165533,
30165916-30166018,30166148-30166279,30166432-30166554,
30166898-30167002,30167397-30167722,30167919-30168258,
30169973-30170113,30170589-30170801,30170901-30171119,
30171272-30171619,30171711-30172043,30172548-30172601
Length = 1188
Score = 27.5 bits (58), Expect = 4.1
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = -3
Query: 368 LVSLFETDPCVETQLRALSWVFEVLCTEFFEAEVYRITGWH*MIVVYTF 222
LVSL ++D C + +L+AL +EF E+ R+TGW ++ Y F
Sbjct: 353 LVSLNKSDKCYKEKLQALK---RNGLSEF-ESFPLRVTGWPVELMAYAF 397
>01_01_0469 -
3456067-3456123,3456414-3456565,3456649-3456779,
3456846-3458036,3458460-3458541,3458947-3458984,
3459091-3459250,3459356-3459557,3460245-3460329,
3460809-3460863,3461230-3461325,3461807-3461940,
3462031-3462043,3462315-3462419,3462935-3463121
Length = 895
Score = 27.1 bits (57), Expect = 5.4
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +3
Query: 156 RKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSAQDLKDPAKRTKLRF 335
R H R+ N + S+ ++ N PT F + +D P +RT R
Sbjct: 292 RSKHGRLDDNLTDENSERLWKMEPFNSEDRFPTPIVEQFDTRDYGFKDRYSPEQRTSTRT 351
Query: 336 NTR 344
NTR
Sbjct: 352 NTR 354
>12_02_0856 +
23708234-23708420,23709364-23709567,23709689-23709918,
23710174-23710174,23710268-23710788
Length = 380
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 224 FDERLDFRPLVNFIFSHPFMNLARVSVDAGDES 126
F R D PL N++F H N VSV +S
Sbjct: 177 FAVRDDLEPLRNYVFRHAIYNYEAVSVKPKTDS 209
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 272 QLRKIQCTGPQRPS*AHEAAFQH--KGPFRREIQERKEQ 382
QL++ P +P+ H+A FQH + P++++ Q+ +Q
Sbjct: 113 QLQQPTQQSPFQPTAQHQAPFQHSQRAPYQQQQQQMSQQ 151
>03_06_0285 +
32848085-32848988,32849057-32849245,32850136-32850311,
32850569-32851141
Length = 613
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 106 LTNHTDMLSSPASTDTRARFIK 171
LT++T SSPA+T T A FI+
Sbjct: 505 LTDYTGTPSSPATTTTNATFIR 526
>09_03_0139 + 12692844-12694982
Length = 712
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +3
Query: 24 PGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAG 140
P V L+ G Y GRK +V Y S +G A AG
Sbjct: 527 PTLVQLIRDGAYRGRKNAMVSLYGLLQSAANHGRAIAAG 565
>06_03_0449 + 20907491-20910146,20910313-20910782
Length = 1041
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 137 GDESMSVWFVRCALVVILYDNGFTACVPA 51
GD +W + V++ +NGFT +PA
Sbjct: 432 GDFPEKIWSFQKLTTVMIQNNGFTGALPA 460
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,302,414
Number of Sequences: 37544
Number of extensions: 227367
Number of successful extensions: 672
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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