Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_C04
(394 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 184 3e-47
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 184 3e-47
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 29 0.90
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 29 0.90
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 29 0.90
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 29 0.90
U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon gu... 28 2.1
U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon gu... 28 2.1
AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr pro... 28 2.1
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 27 3.6
Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kin... 27 4.8
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 26 8.4
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 26 8.4
Z75711-7|CAB00031.2| 380|Caenorhabditis elegans Hypothetical pr... 26 8.4
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 26 8.4
AF286377-1|AAG10298.1| 380|Caenorhabditis elegans POU family II... 26 8.4
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 184 bits (447), Expect = 3e-47
Identities = 85/131 (64%), Positives = 103/131 (78%), Gaps = 2/131 (1%)
Frame = +3
Query: 6 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 185
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 186 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FSAQDLKDPAKRTKLRFNTRVRFEE 359
KI KR+K+KPF+K V+Y HL+PTRYSVD +F+K + + LK P+K+ K + +FEE
Sbjct: 61 KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEE 120
Query: 360 RYKSGKNKWFF 392
RYK+GKNKWFF
Sbjct: 121 RYKTGKNKWFF 131
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 184 bits (447), Expect = 3e-47
Identities = 85/131 (64%), Positives = 103/131 (78%), Gaps = 2/131 (1%)
Frame = +3
Query: 6 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 185
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 186 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FSAQDLKDPAKRTKLRFNTRVRFEE 359
KI KR+K+KPF+K V+Y HL+PTRYSVD +F+K + + LK P+K+ K + +FEE
Sbjct: 61 KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEE 120
Query: 360 RYKSGKNKWFF 392
RYK+GKNKWFF
Sbjct: 121 RYKTGKNKWFF 131
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 29.5 bits (63), Expect = 0.90
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 12 KIMKPGKVVLVLSGRYAGRKAIVVK 86
K + PG V++VL+GR+ G++ + +K
Sbjct: 69 KTLTPGTVLIVLAGRHKGKRVVFLK 93
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 29.5 bits (63), Expect = 0.90
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 135 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK 284
AG++R ++ + NK KR KI K YNHL+PT +D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVPT---IDYSAMK 456
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 29.5 bits (63), Expect = 0.90
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 135 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK 284
AG++R ++ + NK KR KI K YNHL+PT +D+S K
Sbjct: 386 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVPT---IDYSAMK 430
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 29.5 bits (63), Expect = 0.90
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 135 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK 284
AG++R ++ + NK KR KI K YNHL+PT +D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVPT---IDYSAMK 456
>U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform a protein.
Length = 476
Score = 28.3 bits (60), Expect = 2.1
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +3
Query: 105 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLM----PTRYSV-- 266
SD P A I R+ + +R+G + K PFVK +++NH+ P R +V
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 402
Query: 267 --DFS-FEKFSAQDLKDP 311
D S F+ F +DL P
Sbjct: 403 IDDTSNFDDFPDEDLTWP 420
>U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform b protein.
Length = 474
Score = 28.3 bits (60), Expect = 2.1
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +3
Query: 105 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLM----PTRYSV-- 266
SD P A I R+ + +R+G + K PFVK +++NH+ P R +V
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 402
Query: 267 --DFS-FEKFSAQDLKDP 311
D S F+ F +DL P
Sbjct: 403 IDDTSNFDDFPDEDLTWP 420
>AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr
protein kinase protein.
Length = 469
Score = 28.3 bits (60), Expect = 2.1
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +3
Query: 105 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLM----PTRYSV-- 266
SD P A I R+ + +R+G + K PFVK +++NH+ P R +V
Sbjct: 336 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 395
Query: 267 --DFS-FEKFSAQDLKDP 311
D S F+ F +DL P
Sbjct: 396 IDDTSNFDDFPDEDLTWP 413
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 27.5 bits (58), Expect = 3.6
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 135 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEK 284
AG++R V + N+ KR KI + YNHL+PT +D+S K
Sbjct: 386 AGVERGQNHVATHL--NRQLKRQKISKLEREKIYNHLVPT---IDYSAMK 430
>Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kinase
protein.
Length = 404
Score = 27.1 bits (57), Expect = 4.8
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = +3
Query: 105 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKGVNYNHLM----PTRYSV-- 266
SD P A I R+ + +R+G + K PFVK +++NH+ P R +V
Sbjct: 285 SDVPISIEAKATIKRFCCERERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 344
Query: 267 --DFS-FEKFSAQDLKDP 311
D S F+ F +DL P
Sbjct: 345 IDDTSNFDDFPDEDLTWP 362
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 36 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRY 152
++ ++G +G KA+ Y + D PYG + + G+ Y
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY 214
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 36 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRY 152
++ ++G +G KA+ Y + D PYG + + G+ Y
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY 214
>Z75711-7|CAB00031.2| 380|Caenorhabditis elegans Hypothetical
protein K02B12.1 protein.
Length = 380
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 252 TRYSVDFSFEKFSAQDLKDPAKRTKLRFNTRVRFEERYKSGK 377
T S + +FEK + Q + KRT + N + R E ++S +
Sbjct: 263 TTGSPNSTFEKMTGQAGRKRKKRTSIEVNVKSRLEFHFQSNQ 304
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 36 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRY 152
++ ++G +G KA+ Y + D PYG + + G+ Y
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY 214
>AF286377-1|AAG10298.1| 380|Caenorhabditis elegans POU family III
homeodomain proteinCEH-6 protein.
Length = 380
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 252 TRYSVDFSFEKFSAQDLKDPAKRTKLRFNTRVRFEERYKSGK 377
T S + +FEK + Q + KRT + N + R E ++S +
Sbjct: 263 TTGSPNSTFEKMTGQAGRKRKKRTSIEVNVKSRLEFHFQSNQ 304
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,615,164
Number of Sequences: 27780
Number of extensions: 197173
Number of successful extensions: 582
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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